miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 43021 0.68 0.638253
Target:  5'- aGCa-GCAGCUuuuucuuGCCCUCGGCGC-GCa -3'
miRNA:   3'- -CGacCGUUGGu------CGGGAGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 43121 0.73 0.376402
Target:  5'- cGCU-GCGGCgAGCgCUCGGCGCUGg- -3'
miRNA:   3'- -CGAcCGUUGgUCGgGAGCCGCGACga -5'
13962 5' -61 NC_003521.1 + 43198 0.69 0.609081
Target:  5'- cCUGuGCAACguGCUCaUCGGCcuGCUGCa -3'
miRNA:   3'- cGAC-CGUUGguCGGG-AGCCG--CGACGa -5'
13962 5' -61 NC_003521.1 + 44501 0.66 0.752554
Target:  5'- aGCgcaaCAACCGGCCCau-GCGCUGCa -3'
miRNA:   3'- -CGacc-GUUGGUCGGGagcCGCGACGa -5'
13962 5' -61 NC_003521.1 + 50325 0.7 0.532407
Target:  5'- gGgaGGCAGCgGGUCCUCGGCccguUUGCg -3'
miRNA:   3'- -CgaCCGUUGgUCGGGAGCCGc---GACGa -5'
13962 5' -61 NC_003521.1 + 51385 0.67 0.734096
Target:  5'- uGCUGucuCAACCAGCCCUccCGGCuguccgagaagGUUGCc -3'
miRNA:   3'- -CGACc--GUUGGUCGGGA--GCCG-----------CGACGa -5'
13962 5' -61 NC_003521.1 + 52359 0.66 0.752555
Target:  5'- aGCUGGaaauggAGCgCGGCCCUCaugguGGuCGCUGUa -3'
miRNA:   3'- -CGACCg-----UUG-GUCGGGAG-----CC-GCGACGa -5'
13962 5' -61 NC_003521.1 + 53426 0.73 0.364081
Target:  5'- gGCgagGGCGGCCGcguguacuguuacgcGCCCUCgGGCGaCUGCg -3'
miRNA:   3'- -CGa--CCGUUGGU---------------CGGGAG-CCGC-GACGa -5'
13962 5' -61 NC_003521.1 + 55274 0.69 0.609082
Target:  5'- cGCUGGCGcugcGCCuuaAGCCCuacaagUCGGCcauccagcaGCUGCg -3'
miRNA:   3'- -CGACCGU----UGG---UCGGG------AGCCG---------CGACGa -5'
13962 5' -61 NC_003521.1 + 55509 0.69 0.609082
Target:  5'- cGCgGGCucGCCggcgAGCCgCUCGGgGCUGUa -3'
miRNA:   3'- -CGaCCGu-UGG----UCGG-GAGCCgCGACGa -5'
13962 5' -61 NC_003521.1 + 56101 0.69 0.609082
Target:  5'- cCUGuGCAagGCCGGCCUgccGCGCUGCg -3'
miRNA:   3'- cGAC-CGU--UGGUCGGGagcCGCGACGa -5'
13962 5' -61 NC_003521.1 + 57181 0.66 0.752555
Target:  5'- uGCUGG-AGgCGGUgCUgCGGCGCUGUc -3'
miRNA:   3'- -CGACCgUUgGUCGgGA-GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 58053 0.7 0.541835
Target:  5'- uGCUGGCGGCCA-CCCgauaCGGCGaagaggGCa -3'
miRNA:   3'- -CGACCGUUGGUcGGGa---GCCGCga----CGa -5'
13962 5' -61 NC_003521.1 + 59015 0.71 0.504496
Target:  5'- gGCUGGaccUCAGCCCgcagUGGCuGCUGCa -3'
miRNA:   3'- -CGACCguuGGUCGGGa---GCCG-CGACGa -5'
13962 5' -61 NC_003521.1 + 62086 0.66 0.79603
Target:  5'- --cGuGCGACCAGUCCaaccgggaacgcuUCGGCGCccGCg -3'
miRNA:   3'- cgaC-CGUUGGUCGGG-------------AGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 63899 0.66 0.761644
Target:  5'- gGUUGcGCGugCGGUacuucuCCaggCGGCGCUGCa -3'
miRNA:   3'- -CGAC-CGUugGUCG------GGa--GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 65378 0.68 0.677052
Target:  5'- --cGGUAcucguCCAGCUgUCGGCGCcGCUc -3'
miRNA:   3'- cgaCCGUu----GGUCGGgAGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 65895 0.66 0.77063
Target:  5'- gGCUGGCGcgcgUCAGCuCCUCgcgGGCcguguuuaGCUGCUg -3'
miRNA:   3'- -CGACCGUu---GGUCG-GGAG---CCG--------CGACGA- -5'
13962 5' -61 NC_003521.1 + 67844 0.68 0.667384
Target:  5'- uGUUGGCGACUcuGGCCCgCGGgGCccGCc -3'
miRNA:   3'- -CGACCGUUGG--UCGGGaGCCgCGa-CGa -5'
13962 5' -61 NC_003521.1 + 70341 0.67 0.714371
Target:  5'- uGC-GGCAACCcgcuguacgugcuGGCCCgacaGGCGgUGCa -3'
miRNA:   3'- -CGaCCGUUGG-------------UCGGGag--CCGCgACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.