miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 57181 0.66 0.752555
Target:  5'- uGCUGG-AGgCGGUgCUgCGGCGCUGUc -3'
miRNA:   3'- -CGACCgUUgGUCGgGA-GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 63899 0.66 0.761644
Target:  5'- gGUUGcGCGugCGGUacuucuCCaggCGGCGCUGCa -3'
miRNA:   3'- -CGAC-CGUugGUCG------GGa--GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 34429 0.66 0.77063
Target:  5'- aGUUGGCccgcGACCucaaGGCCUUCGuGCGCguggGCc -3'
miRNA:   3'- -CGACCG----UUGG----UCGGGAGC-CGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 88178 0.66 0.752555
Target:  5'- cGC-GGCGGCCAGCCa--GGaguCGUUGCUc -3'
miRNA:   3'- -CGaCCGUUGGUCGGgagCC---GCGACGA- -5'
13962 5' -61 NC_003521.1 + 88912 0.66 0.752555
Target:  5'- cCUGGCGGCCcucuGCgCCUCGcuGgGCUGUg -3'
miRNA:   3'- cGACCGUUGGu---CG-GGAGC--CgCGACGa -5'
13962 5' -61 NC_003521.1 + 212643 0.66 0.765251
Target:  5'- -gUGGCucuucgucgccauCCAGCCUUgGGCGgUGCa -3'
miRNA:   3'- cgACCGuu-----------GGUCGGGAgCCGCgACGa -5'
13962 5' -61 NC_003521.1 + 74172 0.66 0.761644
Target:  5'- cGCUGGcCGACUGcGCCg-CGGCGCccgGCg -3'
miRNA:   3'- -CGACC-GUUGGU-CGGgaGCCGCGa--CGa -5'
13962 5' -61 NC_003521.1 + 32077 0.66 0.77063
Target:  5'- aCUGGCccguggccacGGCCAGCgCCaugcguuuggCGGCGCgGCUg -3'
miRNA:   3'- cGACCG----------UUGGUCG-GGa---------GCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 162434 0.66 0.779504
Target:  5'- cGCUuucGGUuuCCAGUccgCCUCGGCGgUGUUc -3'
miRNA:   3'- -CGA---CCGuuGGUCG---GGAGCCGCgACGA- -5'
13962 5' -61 NC_003521.1 + 74835 0.66 0.788259
Target:  5'- cGCgacGGCGuCCcGCCCUCa-CGCUGCa -3'
miRNA:   3'- -CGa--CCGUuGGuCGGGAGccGCGACGa -5'
13962 5' -61 NC_003521.1 + 19133 0.66 0.796887
Target:  5'- uGCUcGGCAACgAGaCCCaCGGCGUgGUg -3'
miRNA:   3'- -CGA-CCGUUGgUC-GGGaGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 149050 0.66 0.761644
Target:  5'- ---cGCAGCCgcGGCuCCUCGGCGCgaccGCc -3'
miRNA:   3'- cgacCGUUGG--UCG-GGAGCCGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 100541 0.66 0.796887
Target:  5'- aGCUGGgGAuCCGacgacgauacucGCCCUCGGCGUc--- -3'
miRNA:   3'- -CGACCgUU-GGU------------CGGGAGCCGCGacga -5'
13962 5' -61 NC_003521.1 + 145530 0.66 0.752555
Target:  5'- aGCUGGCcGCCgAGgCCgaggaGGCGCccUGCa -3'
miRNA:   3'- -CGACCGuUGG-UCgGGag---CCGCG--ACGa -5'
13962 5' -61 NC_003521.1 + 62086 0.66 0.79603
Target:  5'- --cGuGCGACCAGUCCaaccgggaacgcuUCGGCGCccGCg -3'
miRNA:   3'- cgaC-CGUUGGUCGGG-------------AGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 153613 0.66 0.799449
Target:  5'- gGUUGGCGcucagcagcuccugcGCCAGCgggugcgUCUCGGUGgaGCg -3'
miRNA:   3'- -CGACCGU---------------UGGUCG-------GGAGCCGCgaCGa -5'
13962 5' -61 NC_003521.1 + 118267 0.66 0.796887
Target:  5'- cGC-GGUAGCCGGCaCCagCGGCGgUaGCa -3'
miRNA:   3'- -CGaCCGUUGGUCG-GGa-GCCGCgA-CGa -5'
13962 5' -61 NC_003521.1 + 219358 0.66 0.752555
Target:  5'- gGCUGGUGACgAuGCCCgaacaGGUcucGCUGCUc -3'
miRNA:   3'- -CGACCGUUGgU-CGGGag---CCG---CGACGA- -5'
13962 5' -61 NC_003521.1 + 31716 0.66 0.77063
Target:  5'- cCUGGCuuCUAacGCCgUgcUGGCGCUGCg -3'
miRNA:   3'- cGACCGuuGGU--CGGgA--GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 166884 0.66 0.779504
Target:  5'- aGCUGcuacagggacaGCAGCagcaGGCCgUCGGCGCcGUg -3'
miRNA:   3'- -CGAC-----------CGUUGg---UCGGgAGCCGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.