Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13962 | 5' | -61 | NC_003521.1 | + | 162434 | 0.66 | 0.779504 |
Target: 5'- cGCUuucGGUuuCCAGUccgCCUCGGCGgUGUUc -3' miRNA: 3'- -CGA---CCGuuGGUCG---GGAGCCGCgACGA- -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 17511 | 0.66 | 0.749808 |
Target: 5'- --cGGCGGuucCCGGCCCggCGGCGCgggauucagccaguUGCg -3' miRNA: 3'- cgaCCGUU---GGUCGGGa-GCCGCG--------------ACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 128094 | 0.66 | 0.777738 |
Target: 5'- cGCUGGaagcgcgacuCCAGCa---GGCGCUGCa -3' miRNA: 3'- -CGACCguu-------GGUCGggagCCGCGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 73140 | 0.66 | 0.769736 |
Target: 5'- gGCgggGGCAGCggCGGCggcgccgCCUCGGC-CUGCg -3' miRNA: 3'- -CGa--CCGUUG--GUCG-------GGAGCCGcGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 71017 | 0.66 | 0.761644 |
Target: 5'- cGCUGGCuggaGACCGGCggaggauagucCCUCGaGCGCccaaaGCg -3' miRNA: 3'- -CGACCG----UUGGUCG-----------GGAGC-CGCGa----CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 32878 | 0.66 | 0.761644 |
Target: 5'- uUUGGCGcCCGcGCCgC-CGGUGCUGCc -3' miRNA: 3'- cGACCGUuGGU-CGG-GaGCCGCGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 188139 | 0.66 | 0.788259 |
Target: 5'- gGCUGGCAccGCCGacGCUgcCGGUGCcGCUg -3' miRNA: 3'- -CGACCGU--UGGU--CGGgaGCCGCGaCGA- -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 32077 | 0.66 | 0.77063 |
Target: 5'- aCUGGCccguggccacGGCCAGCgCCaugcguuuggCGGCGCgGCUg -3' miRNA: 3'- cGACCG----------UUGGUCG-GGa---------GCCGCGaCGA- -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 100541 | 0.66 | 0.796887 |
Target: 5'- aGCUGGgGAuCCGacgacgauacucGCCCUCGGCGUc--- -3' miRNA: 3'- -CGACCgUU-GGU------------CGGGAGCCGCGacga -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 116582 | 0.66 | 0.761644 |
Target: 5'- aGCUGGUcucGCgCGGCCCUCccugcaaGuCGCUGCg -3' miRNA: 3'- -CGACCGu--UG-GUCGGGAGc------C-GCGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 33555 | 0.66 | 0.796887 |
Target: 5'- cGCcGGCAuguACgAGCUCUCGcaGCuGCUGCa -3' miRNA: 3'- -CGaCCGU---UGgUCGGGAGC--CG-CGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 115373 | 0.66 | 0.77063 |
Target: 5'- cGCUGGCcagGGCCGGCaugugCagGGCGCggGCg -3' miRNA: 3'- -CGACCG---UUGGUCGg----GagCCGCGa-CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 74835 | 0.66 | 0.788259 |
Target: 5'- cGCgacGGCGuCCcGCCCUCa-CGCUGCa -3' miRNA: 3'- -CGa--CCGUuGGuCGGGAGccGCGACGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 166125 | 0.66 | 0.796887 |
Target: 5'- uGCUucagGGCGGCCGGCaggUCGGCGUaGUa -3' miRNA: 3'- -CGA----CCGUUGGUCGgg-AGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 155615 | 0.66 | 0.779504 |
Target: 5'- aGgUGGCGACCGcuGUUCUCGGCgGCgGUg -3' miRNA: 3'- -CgACCGUUGGU--CGGGAGCCG-CGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 74172 | 0.66 | 0.761644 |
Target: 5'- cGCUGGcCGACUGcGCCg-CGGCGCccgGCg -3' miRNA: 3'- -CGACC-GUUGGU-CGGgaGCCGCGa--CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 118267 | 0.66 | 0.796887 |
Target: 5'- cGC-GGUAGCCGGCaCCagCGGCGgUaGCa -3' miRNA: 3'- -CGaCCGUUGGUCG-GGa-GCCGCgA-CGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 138793 | 0.66 | 0.77063 |
Target: 5'- uGC-GGCAACCGccaggagauGCCCUCcauGGCGC-GCc -3' miRNA: 3'- -CGaCCGUUGGU---------CGGGAG---CCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 19133 | 0.66 | 0.796887 |
Target: 5'- uGCUcGGCAACgAGaCCCaCGGCGUgGUg -3' miRNA: 3'- -CGA-CCGUUGgUC-GGGaGCCGCGaCGa -5' |
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13962 | 5' | -61 | NC_003521.1 | + | 62086 | 0.66 | 0.79603 |
Target: 5'- --cGuGCGACCAGUCCaaccgggaacgcuUCGGCGCccGCg -3' miRNA: 3'- cgaC-CGUUGGUCGGG-------------AGCCGCGa-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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