miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 209769 0.69 0.580049
Target:  5'- gGCUGGCAguggaGCgAGCuCCgguuacaGGUGCUGCa -3'
miRNA:   3'- -CGACCGU-----UGgUCG-GGag-----CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 224407 0.71 0.486243
Target:  5'- aGCcGGUAcaccucGCCGGCCa--GGCGCUGCg -3'
miRNA:   3'- -CGaCCGU------UGGUCGGgagCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 224743 0.71 0.486243
Target:  5'- cGCaGGCGGCCAGCgCgUCGGgGCUccgGCa -3'
miRNA:   3'- -CGaCCGUUGGUCG-GgAGCCgCGA---CGa -5'
13962 5' -61 NC_003521.1 + 165780 0.7 0.523037
Target:  5'- uGCcGaaGGCCAGCCCgcuGGCGCUGCc -3'
miRNA:   3'- -CGaCcgUUGGUCGGGag-CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 217348 0.7 0.523037
Target:  5'- --cGGCGGCCGGUCCUCGuacuUGCUGUg -3'
miRNA:   3'- cgaCCGUUGGUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 50325 0.7 0.532407
Target:  5'- gGgaGGCAGCgGGUCCUCGGCccguUUGCg -3'
miRNA:   3'- -CgaCCGUUGgUCGGGAGCCGc---GACGa -5'
13962 5' -61 NC_003521.1 + 225590 0.7 0.532407
Target:  5'- cGCUcGGCGGCCucGCgCUCGGcCGcCUGCa -3'
miRNA:   3'- -CGA-CCGUUGGu-CGgGAGCC-GC-GACGa -5'
13962 5' -61 NC_003521.1 + 58053 0.7 0.541835
Target:  5'- uGCUGGCGGCCA-CCCgauaCGGCGaagaggGCa -3'
miRNA:   3'- -CGACCGUUGGUcGGGa---GCCGCga----CGa -5'
13962 5' -61 NC_003521.1 + 236592 0.7 0.551319
Target:  5'- --cGGCAGCCAG-CCUCGGgGCUcCg -3'
miRNA:   3'- cgaCCGUUGGUCgGGAGCCgCGAcGa -5'
13962 5' -61 NC_003521.1 + 202525 0.71 0.486243
Target:  5'- cGCUGGcCGACgAGCUCUCGcaccUGCUGCg -3'
miRNA:   3'- -CGACC-GUUGgUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 197556 0.71 0.459471
Target:  5'- aGC-GGCGGCgAGCuCCUgagcucgggagcUGGCGCUGCUa -3'
miRNA:   3'- -CGaCCGUUGgUCG-GGA------------GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 194791 0.71 0.459471
Target:  5'- cGCUGccgcCAugUGGCCCUucaCGGUGCUGCUg -3'
miRNA:   3'- -CGACc---GUugGUCGGGA---GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 77694 0.76 0.272113
Target:  5'- cGCUGGCGAagaCAGCCguggCGGCGUUGUUg -3'
miRNA:   3'- -CGACCGUUg--GUCGGga--GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 79621 0.75 0.3108
Target:  5'- uGCcggGGCGACCgcGGCgCCUCGGCGUcgucUGCUg -3'
miRNA:   3'- -CGa--CCGUUGG--UCG-GGAGCCGCG----ACGA- -5'
13962 5' -61 NC_003521.1 + 43121 0.73 0.376402
Target:  5'- cGCU-GCGGCgAGCgCUCGGCGCUGg- -3'
miRNA:   3'- -CGAcCGUUGgUCGgGAGCCGCGACga -5'
13962 5' -61 NC_003521.1 + 192814 0.73 0.376402
Target:  5'- cGCUGGCAGCagccgcagaAGCCCggCGGCGCguccGUg -3'
miRNA:   3'- -CGACCGUUGg--------UCGGGa-GCCGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 99606 0.72 0.433504
Target:  5'- cGUUGGUGACCugcagcGCCCggCGGCGCaGCg -3'
miRNA:   3'- -CGACCGUUGGu-----CGGGa-GCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 105599 0.72 0.433504
Target:  5'- cGCcGGCG--CAGCCgCUCaGGCGCUGCa -3'
miRNA:   3'- -CGaCCGUugGUCGG-GAG-CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 148823 0.72 0.433504
Target:  5'- cGC-GGCGACCGccuGCCCUCGGCcgaGgUGCg -3'
miRNA:   3'- -CGaCCGUUGGU---CGGGAGCCG---CgACGa -5'
13962 5' -61 NC_003521.1 + 234759 0.72 0.450723
Target:  5'- gGCUGGCGugAUCAcGCCCUgCGGgGCcGCUg -3'
miRNA:   3'- -CGACCGU--UGGU-CGGGA-GCCgCGaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.