miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 30367 1.09 0.001441
Target:  5'- gGCUGGCAACCAGCCCUCGGCGCUGCUa -3'
miRNA:   3'- -CGACCGUUGGUCGGGAGCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 238791 0.71 0.486243
Target:  5'- cGCUGGcCGACgAGCUCUCGcaccUGCUGCg -3'
miRNA:   3'- -CGACC-GUUGgUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 164718 0.71 0.495331
Target:  5'- aGC-GGCGACCgugacggccgcGGCCgCggUGGCGCUGCUa -3'
miRNA:   3'- -CGaCCGUUGG-----------UCGG-Ga-GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 33555 0.66 0.796887
Target:  5'- cGCcGGCAuguACgAGCUCUCGcaGCuGCUGCa -3'
miRNA:   3'- -CGaCCGU---UGgUCGGGAGC--CG-CGACGa -5'
13962 5' -61 NC_003521.1 + 71020 0.76 0.260106
Target:  5'- aGCUGGUGAUCGGCCg-CGGCGC-GCUg -3'
miRNA:   3'- -CGACCGUUGGUCGGgaGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 163355 0.75 0.284563
Target:  5'- cGCUGGCGcccgaggacggGCCGG-CCUCGGCGUgGCUc -3'
miRNA:   3'- -CGACCGU-----------UGGUCgGGAGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 136982 0.74 0.324594
Target:  5'- gGC-GGCGcgcuGCCAGUCCUCGGCGgcgucCUGCUc -3'
miRNA:   3'- -CGaCCGU----UGGUCGGGAGCCGC-----GACGA- -5'
13962 5' -61 NC_003521.1 + 168788 0.74 0.33166
Target:  5'- cGCUGGCcGCCAGCCUgcuGGCGUcGCc -3'
miRNA:   3'- -CGACCGuUGGUCGGGag-CCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 3709 0.72 0.416675
Target:  5'- ---aGCAGCCuguGCCCUCGGCGUcgGCa -3'
miRNA:   3'- cgacCGUUGGu--CGGGAGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 163087 0.71 0.485339
Target:  5'- -aUGGUcgcgcagAGCCAGCCCUUGGUGagaUGCa -3'
miRNA:   3'- cgACCG-------UUGGUCGGGAGCCGCg--ACGa -5'
13962 5' -61 NC_003521.1 + 137964 0.72 0.442066
Target:  5'- aGCUGGCG--CAGCgCgcggCGGUGCUGCa -3'
miRNA:   3'- -CGACCGUugGUCGgGa---GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 53426 0.73 0.364081
Target:  5'- gGCgagGGCGGCCGcguguacuguuacgcGCCCUCgGGCGaCUGCg -3'
miRNA:   3'- -CGa--CCGUUGGU---------------CGGGAG-CCGC-GACGa -5'
13962 5' -61 NC_003521.1 + 71177 0.79 0.162647
Target:  5'- uGCUGGCGcugaCGGCUCUgaCGGCGCUGCUg -3'
miRNA:   3'- -CGACCGUug--GUCGGGA--GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 75815 0.72 0.442066
Target:  5'- cGCUGGCGuaGCC-GCCgC-CGGCGCcGCUg -3'
miRNA:   3'- -CGACCGU--UGGuCGG-GaGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 156654 0.76 0.242909
Target:  5'- gGgUGGCGAagCGGCCCUCggucaGGCGCUGCa -3'
miRNA:   3'- -CgACCGUUg-GUCGGGAG-----CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 75522 0.74 0.353531
Target:  5'- uGCaUGuGCAGCCGGCCCuccUCGGCG-UGCa -3'
miRNA:   3'- -CG-AC-CGUUGGUCGGG---AGCCGCgACGa -5'
13962 5' -61 NC_003521.1 + 219406 0.71 0.480829
Target:  5'- uGCUGGUAcCCuGCCugucucugcucugcgCUaCGGCGCUGCUc -3'
miRNA:   3'- -CGACCGUuGGuCGG---------------GA-GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 31075 0.71 0.486243
Target:  5'- cGCgGGUuucgccGGCgGGCCCUCGGUGC-GCUa -3'
miRNA:   3'- -CGaCCG------UUGgUCGGGAGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 112015 0.76 0.260106
Target:  5'- aGCUGGCG--CAGaCCCUCGGCGUacUGCa -3'
miRNA:   3'- -CGACCGUugGUC-GGGAGCCGCG--ACGa -5'
13962 5' -61 NC_003521.1 + 86018 0.75 0.310801
Target:  5'- cGCUGGCcACCucgcucauGGCCaaguucgCGGCGCUGCa -3'
miRNA:   3'- -CGACCGuUGG--------UCGGga-----GCCGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.