miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 30367 1.09 0.001441
Target:  5'- gGCUGGCAACCAGCCCUCGGCGCUGCUa -3'
miRNA:   3'- -CGACCGUUGGUCGGGAGCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 168534 0.82 0.099313
Target:  5'- gGCUGGCGGCCAGCgCggcggCGGCGCUgGCg -3'
miRNA:   3'- -CGACCGUUGGUCGgGa----GCCGCGA-CGa -5'
13962 5' -61 NC_003521.1 + 71177 0.79 0.162647
Target:  5'- uGCUGGCGcugaCGGCUCUgaCGGCGCUGCUg -3'
miRNA:   3'- -CGACCGUug--GUCGGGA--GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 156654 0.76 0.242909
Target:  5'- gGgUGGCGAagCGGCCCUCggucaGGCGCUGCa -3'
miRNA:   3'- -CgACCGUUg-GUCGGGAG-----CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 112015 0.76 0.260106
Target:  5'- aGCUGGCG--CAGaCCCUCGGCGUacUGCa -3'
miRNA:   3'- -CGACCGUugGUC-GGGAGCCGCG--ACGa -5'
13962 5' -61 NC_003521.1 + 71020 0.76 0.260106
Target:  5'- aGCUGGUGAUCGGCCg-CGGCGC-GCUg -3'
miRNA:   3'- -CGACCGUUGGUCGGgaGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 77694 0.76 0.272113
Target:  5'- cGCUGGCGAagaCAGCCguggCGGCGUUGUUg -3'
miRNA:   3'- -CGACCGUUg--GUCGGga--GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 163355 0.75 0.284563
Target:  5'- cGCUGGCGcccgaggacggGCCGG-CCUCGGCGUgGCUc -3'
miRNA:   3'- -CGACCGU-----------UGGUCgGGAGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 79621 0.75 0.3108
Target:  5'- uGCcggGGCGACCgcGGCgCCUCGGCGUcgucUGCUg -3'
miRNA:   3'- -CGa--CCGUUGG--UCG-GGAGCCGCG----ACGA- -5'
13962 5' -61 NC_003521.1 + 86018 0.75 0.310801
Target:  5'- cGCUGGCcACCucgcucauGGCCaaguucgCGGCGCUGCa -3'
miRNA:   3'- -CGACCGuUGG--------UCGGga-----GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 136982 0.74 0.324594
Target:  5'- gGC-GGCGcgcuGCCAGUCCUCGGCGgcgucCUGCUc -3'
miRNA:   3'- -CGaCCGU----UGGUCGGGAGCCGC-----GACGA- -5'
13962 5' -61 NC_003521.1 + 168788 0.74 0.33166
Target:  5'- cGCUGGCcGCCAGCCUgcuGGCGUcGCc -3'
miRNA:   3'- -CGACCGuUGGUCGGGag-CCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 75522 0.74 0.353531
Target:  5'- uGCaUGuGCAGCCGGCCCuccUCGGCG-UGCa -3'
miRNA:   3'- -CG-AC-CGUUGGUCGGG---AGCCGCgACGa -5'
13962 5' -61 NC_003521.1 + 53426 0.73 0.364081
Target:  5'- gGCgagGGCGGCCGcguguacuguuacgcGCCCUCgGGCGaCUGCg -3'
miRNA:   3'- -CGa--CCGUUGGU---------------CGGGAG-CCGC-GACGa -5'
13962 5' -61 NC_003521.1 + 43121 0.73 0.376402
Target:  5'- cGCU-GCGGCgAGCgCUCGGCGCUGg- -3'
miRNA:   3'- -CGAcCGUUGgUCGgGAGCCGCGACga -5'
13962 5' -61 NC_003521.1 + 192814 0.73 0.376402
Target:  5'- cGCUGGCAGCagccgcagaAGCCCggCGGCGCguccGUg -3'
miRNA:   3'- -CGACCGUUGg--------UCGGGa-GCCGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 3709 0.72 0.416675
Target:  5'- ---aGCAGCCuguGCCCUCGGCGUcgGCa -3'
miRNA:   3'- cgacCGUUGGu--CGGGAGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 17347 0.72 0.428414
Target:  5'- cGgUGGCGggaacgugggucgccGCCAGCgguauCgUCGGCGCUGCUg -3'
miRNA:   3'- -CgACCGU---------------UGGUCG-----GgAGCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 99606 0.72 0.433504
Target:  5'- cGUUGGUGACCugcagcGCCCggCGGCGCaGCg -3'
miRNA:   3'- -CGACCGUUGGu-----CGGGa-GCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 105599 0.72 0.433504
Target:  5'- cGCcGGCG--CAGCCgCUCaGGCGCUGCa -3'
miRNA:   3'- -CGaCCGUugGUCGG-GAG-CCGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.