miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 3709 0.72 0.416675
Target:  5'- ---aGCAGCCuguGCCCUCGGCGUcgGCa -3'
miRNA:   3'- cgacCGUUGGu--CGGGAGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 5839 0.68 0.647976
Target:  5'- --cGGCGACCggGGCCCUUuuaugcgauccgGGCGCggGCa -3'
miRNA:   3'- cgaCCGUUGG--UCGGGAG------------CCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 17347 0.72 0.428414
Target:  5'- cGgUGGCGggaacgugggucgccGCCAGCgguauCgUCGGCGCUGCUg -3'
miRNA:   3'- -CgACCGU---------------UGGUCG-----GgAGCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 17511 0.66 0.749808
Target:  5'- --cGGCGGuucCCGGCCCggCGGCGCgggauucagccaguUGCg -3'
miRNA:   3'- cgaCCGUU---GGUCGGGa-GCCGCG--------------ACGa -5'
13962 5' -61 NC_003521.1 + 19133 0.66 0.796887
Target:  5'- uGCUcGGCAACgAGaCCCaCGGCGUgGUg -3'
miRNA:   3'- -CGA-CCGUUGgUC-GGGaGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 26230 0.69 0.625606
Target:  5'- --cGGCuuCCAGCCCcucgUCGcgcacggaacgccaGCGCUGCUg -3'
miRNA:   3'- cgaCCGuuGGUCGGG----AGC--------------CGCGACGA- -5'
13962 5' -61 NC_003521.1 + 28757 0.68 0.638252
Target:  5'- cGCgGGCcgcGCCAccGCCCUa-GCGCUGCa -3'
miRNA:   3'- -CGaCCGu--UGGU--CGGGAgcCGCGACGa -5'
13962 5' -61 NC_003521.1 + 30112 0.67 0.734095
Target:  5'- gGCUGGUuGCCAGCCUcaaacauggcgUCGGUcaguuccuGUUGCc -3'
miRNA:   3'- -CGACCGuUGGUCGGG-----------AGCCG--------CGACGa -5'
13962 5' -61 NC_003521.1 + 30367 1.09 0.001441
Target:  5'- gGCUGGCAACCAGCCCUCGGCGCUGCUa -3'
miRNA:   3'- -CGACCGUUGGUCGGGAGCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 31075 0.71 0.486243
Target:  5'- cGCgGGUuucgccGGCgGGCCCUCGGUGC-GCUa -3'
miRNA:   3'- -CGaCCG------UUGgUCGGGAGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 31716 0.66 0.77063
Target:  5'- cCUGGCuuCUAacGCCgUgcUGGCGCUGCg -3'
miRNA:   3'- cGACCGuuGGU--CGGgA--GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 32077 0.66 0.77063
Target:  5'- aCUGGCccguggccacGGCCAGCgCCaugcguuuggCGGCGCgGCUg -3'
miRNA:   3'- cGACCG----------UUGGUCG-GGa---------GCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 32878 0.66 0.761644
Target:  5'- uUUGGCGcCCGcGCCgC-CGGUGCUGCc -3'
miRNA:   3'- cGACCGUuGGU-CGG-GaGCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 33508 0.67 0.734096
Target:  5'- uGCUGGCGuguGCCAGCUCaacGCcgGCUGCa -3'
miRNA:   3'- -CGACCGU---UGGUCGGGagcCG--CGACGa -5'
13962 5' -61 NC_003521.1 + 33555 0.66 0.796887
Target:  5'- cGCcGGCAuguACgAGCUCUCGcaGCuGCUGCa -3'
miRNA:   3'- -CGaCCGU---UGgUCGGGAGC--CG-CGACGa -5'
13962 5' -61 NC_003521.1 + 34351 0.67 0.715317
Target:  5'- cGgaGGCcgugaGGCCcaGGUCCUgGGCGUUGCg -3'
miRNA:   3'- -CgaCCG-----UUGG--UCGGGAgCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 34429 0.66 0.77063
Target:  5'- aGUUGGCccgcGACCucaaGGCCUUCGuGCGCguggGCc -3'
miRNA:   3'- -CGACCG----UUGG----UCGGGAGC-CGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 36820 0.68 0.677052
Target:  5'- cGCUGGUggAGCaCAGCaggaagaagagCUCGGCGCUGg- -3'
miRNA:   3'- -CGACCG--UUG-GUCGg----------GAGCCGCGACga -5'
13962 5' -61 NC_003521.1 + 37094 0.66 0.787389
Target:  5'- --cGGCAcagcagcGCCGGCCCgUGGCGC-GUg -3'
miRNA:   3'- cgaCCGU-------UGGUCGGGaGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 39715 0.69 0.618798
Target:  5'- ----uCGACgCGGCCCUCGGCGCcggGCUc -3'
miRNA:   3'- cgaccGUUG-GUCGGGAGCCGCGa--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.