miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 239641 0.67 0.724742
Target:  5'- uGUUGGCAcaggccguCCAGuCCCguaggCGGCGCcgugGCUc -3'
miRNA:   3'- -CGACCGUu-------GGUC-GGGa----GCCGCGa---CGA- -5'
13962 5' -61 NC_003521.1 + 238881 0.69 0.609082
Target:  5'- --cGGaCGGCCGGCCCUacgcccaGGCcCUGCUa -3'
miRNA:   3'- cgaCC-GUUGGUCGGGAg------CCGcGACGA- -5'
13962 5' -61 NC_003521.1 + 238839 0.69 0.618798
Target:  5'- aGCUGGguGCC-GUCUUCGGCuaCUGCc -3'
miRNA:   3'- -CGACCguUGGuCGGGAGCCGc-GACGa -5'
13962 5' -61 NC_003521.1 + 238791 0.71 0.486243
Target:  5'- cGCUGGcCGACgAGCUCUCGcaccUGCUGCg -3'
miRNA:   3'- -CGACC-GUUGgUCGGGAGCc---GCGACGa -5'
13962 5' -61 NC_003521.1 + 236592 0.7 0.551319
Target:  5'- --cGGCAGCCAG-CCUCGGgGCUcCg -3'
miRNA:   3'- cgaCCGUUGGUCgGGAGCCgCGAcGa -5'
13962 5' -61 NC_003521.1 + 235209 0.68 0.677052
Target:  5'- gGCUGG-AGCCGucgucGUCCUCGcUGCUGCUa -3'
miRNA:   3'- -CGACCgUUGGU-----CGGGAGCcGCGACGA- -5'
13962 5' -61 NC_003521.1 + 234759 0.72 0.450723
Target:  5'- gGCUGGCGugAUCAcGCCCUgCGGgGCcGCUg -3'
miRNA:   3'- -CGACCGU--UGGU-CGGGA-GCCgCGaCGA- -5'
13962 5' -61 NC_003521.1 + 234403 0.68 0.65769
Target:  5'- uGCU-GCAggGCCugcGCCCgCGaGCGCUGCUg -3'
miRNA:   3'- -CGAcCGU--UGGu--CGGGaGC-CGCGACGA- -5'
13962 5' -61 NC_003521.1 + 233046 0.67 0.696281
Target:  5'- cGCUGGUGuaaGGCUCgucugCGGCGuCUGCUg -3'
miRNA:   3'- -CGACCGUuggUCGGGa----GCCGC-GACGA- -5'
13962 5' -61 NC_003521.1 + 232672 0.67 0.734096
Target:  5'- cGCUGGCGuuGCCGuGCCgcaGGCGCaGCc -3'
miRNA:   3'- -CGACCGU--UGGU-CGGgagCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 227122 0.67 0.724742
Target:  5'- cGCUGG-AGCCcugaugGGCCUgccCGGCGCgGCg -3'
miRNA:   3'- -CGACCgUUGG------UCGGGa--GCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 227109 0.69 0.628524
Target:  5'- aGC-GGUucCCAGCCCU-GGCGCaGCg -3'
miRNA:   3'- -CGaCCGuuGGUCGGGAgCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 226729 0.67 0.724742
Target:  5'- --aGGCAGCgu-CCCUCGuuGCGCUGCa -3'
miRNA:   3'- cgaCCGUUGgucGGGAGC--CGCGACGa -5'
13962 5' -61 NC_003521.1 + 226292 0.67 0.724742
Target:  5'- -gUGGCGuACgAGCCCUCGGgCGUgGUg -3'
miRNA:   3'- cgACCGU-UGgUCGGGAGCC-GCGaCGa -5'
13962 5' -61 NC_003521.1 + 225863 0.68 0.667383
Target:  5'- uGCgGGCAcagguGCCGGUgCUCcaugcgcgucuGGCGCUGCc -3'
miRNA:   3'- -CGaCCGU-----UGGUCGgGAG-----------CCGCGACGa -5'
13962 5' -61 NC_003521.1 + 225590 0.7 0.532407
Target:  5'- cGCUcGGCGGCCucGCgCUCGGcCGcCUGCa -3'
miRNA:   3'- -CGA-CCGUUGGu-CGgGAGCC-GC-GACGa -5'
13962 5' -61 NC_003521.1 + 225136 0.67 0.742445
Target:  5'- cCUGGuCGAcgugguugcggacCCAGUcgcgcaccaCCUCGGCGCUGUg -3'
miRNA:   3'- cGACC-GUU-------------GGUCG---------GGAGCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 224743 0.71 0.486243
Target:  5'- cGCaGGCGGCCAGCgCgUCGGgGCUccgGCa -3'
miRNA:   3'- -CGaCCGUUGGUCG-GgAGCCgCGA---CGa -5'
13962 5' -61 NC_003521.1 + 224407 0.71 0.486243
Target:  5'- aGCcGGUAcaccucGCCGGCCa--GGCGCUGCg -3'
miRNA:   3'- -CGaCCGU------UGGUCGGgagCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 223833 0.67 0.734095
Target:  5'- cGCgGGC-GCCugcuGuCCCUgCGGCuGCUGCUg -3'
miRNA:   3'- -CGaCCGuUGGu---C-GGGA-GCCG-CGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.