miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 52359 0.66 0.752555
Target:  5'- aGCUGGaaauggAGCgCGGCCCUCaugguGGuCGCUGUa -3'
miRNA:   3'- -CGACCg-----UUG-GUCGGGAG-----CC-GCGACGa -5'
13962 5' -61 NC_003521.1 + 88912 0.66 0.752555
Target:  5'- cCUGGCGGCCcucuGCgCCUCGcuGgGCUGUg -3'
miRNA:   3'- cGACCGUUGGu---CG-GGAGC--CgCGACGa -5'
13962 5' -61 NC_003521.1 + 57181 0.66 0.752555
Target:  5'- uGCUGG-AGgCGGUgCUgCGGCGCUGUc -3'
miRNA:   3'- -CGACCgUUgGUCGgGA-GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 219358 0.66 0.752555
Target:  5'- gGCUGGUGACgAuGCCCgaacaGGUcucGCUGCUc -3'
miRNA:   3'- -CGACCGUUGgU-CGGGag---CCG---CGACGA- -5'
13962 5' -61 NC_003521.1 + 88178 0.66 0.752555
Target:  5'- cGC-GGCGGCCAGCCa--GGaguCGUUGCUc -3'
miRNA:   3'- -CGaCCGUUGGUCGGgagCC---GCGACGA- -5'
13962 5' -61 NC_003521.1 + 44501 0.66 0.752554
Target:  5'- aGCgcaaCAACCGGCCCau-GCGCUGCa -3'
miRNA:   3'- -CGacc-GUUGGUCGGGagcCGCGACGa -5'
13962 5' -61 NC_003521.1 + 17511 0.66 0.749808
Target:  5'- --cGGCGGuucCCGGCCCggCGGCGCgggauucagccaguUGCg -3'
miRNA:   3'- cgaCCGUU---GGUCGGGa-GCCGCG--------------ACGa -5'
13962 5' -61 NC_003521.1 + 129852 0.67 0.743369
Target:  5'- aGCgucGCGGCCGGCgCggcgCGGCGgaGCa -3'
miRNA:   3'- -CGac-CGUUGGUCGgGa---GCCGCgaCGa -5'
13962 5' -61 NC_003521.1 + 145279 0.67 0.743369
Target:  5'- --cGGCGGCCAGCUCgcgcgcCGGCGuCUcGCc -3'
miRNA:   3'- cgaCCGUUGGUCGGGa-----GCCGC-GA-CGa -5'
13962 5' -61 NC_003521.1 + 116794 0.67 0.743369
Target:  5'- cGCUGGCcgucuaCGGCCgcgaccccgaCUgGGUGCUGCa -3'
miRNA:   3'- -CGACCGuug---GUCGG----------GAgCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 225136 0.67 0.742445
Target:  5'- cCUGGuCGAcgugguugcggacCCAGUcgcgcaccaCCUCGGCGCUGUg -3'
miRNA:   3'- cGACC-GUU-------------GGUCG---------GGAGCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 232672 0.67 0.734096
Target:  5'- cGCUGGCGuuGCCGuGCCgcaGGCGCaGCc -3'
miRNA:   3'- -CGACCGU--UGGU-CGGgagCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 33508 0.67 0.734096
Target:  5'- uGCUGGCGuguGCCAGCUCaacGCcgGCUGCa -3'
miRNA:   3'- -CGACCGU---UGGUCGGGagcCG--CGACGa -5'
13962 5' -61 NC_003521.1 + 51385 0.67 0.734096
Target:  5'- uGCUGucuCAACCAGCCCUccCGGCuguccgagaagGUUGCc -3'
miRNA:   3'- -CGACc--GUUGGUCGGGA--GCCG-----------CGACGa -5'
13962 5' -61 NC_003521.1 + 152134 0.67 0.734095
Target:  5'- aGCUGGUcccGugCAGCagUUCGGCGCgGUa -3'
miRNA:   3'- -CGACCG---UugGUCGg-GAGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 30112 0.67 0.734095
Target:  5'- gGCUGGUuGCCAGCCUcaaacauggcgUCGGUcaguuccuGUUGCc -3'
miRNA:   3'- -CGACCGuUGGUCGGG-----------AGCCG--------CGACGa -5'
13962 5' -61 NC_003521.1 + 112439 0.67 0.734095
Target:  5'- cGCUcaGGCGGCCcaggcGGCCCUggugGGCGCgcccgGCg -3'
miRNA:   3'- -CGA--CCGUUGG-----UCGGGAg---CCGCGa----CGa -5'
13962 5' -61 NC_003521.1 + 125781 0.67 0.734095
Target:  5'- cGCUcaGGCAGCCGGCCUgcgaggcccaGGgGUUGUg -3'
miRNA:   3'- -CGA--CCGUUGGUCGGGag--------CCgCGACGa -5'
13962 5' -61 NC_003521.1 + 197324 0.67 0.734095
Target:  5'- uCUGGuCGGCCAgGCCCUgGGCGaggucaucgGCUc -3'
miRNA:   3'- cGACC-GUUGGU-CGGGAgCCGCga-------CGA- -5'
13962 5' -61 NC_003521.1 + 223833 0.67 0.734095
Target:  5'- cGCgGGC-GCCugcuGuCCCUgCGGCuGCUGCUg -3'
miRNA:   3'- -CGaCCGuUGGu---C-GGGA-GCCG-CGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.