miRNA display CGI


Results 21 - 40 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 31716 0.66 0.77063
Target:  5'- cCUGGCuuCUAacGCCgUgcUGGCGCUGCg -3'
miRNA:   3'- cGACCGuuGGU--CGGgA--GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 34429 0.66 0.77063
Target:  5'- aGUUGGCccgcGACCucaaGGCCUUCGuGCGCguggGCc -3'
miRNA:   3'- -CGACCG----UUGG----UCGGGAGC-CGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 138793 0.66 0.77063
Target:  5'- uGC-GGCAACCGccaggagauGCCCUCcauGGCGC-GCc -3'
miRNA:   3'- -CGaCCGUUGGU---------CGGGAG---CCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 32077 0.66 0.77063
Target:  5'- aCUGGCccguggccacGGCCAGCgCCaugcguuuggCGGCGCgGCUg -3'
miRNA:   3'- cGACCG----------UUGGUCG-GGa---------GCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 115373 0.66 0.77063
Target:  5'- cGCUGGCcagGGCCGGCaugugCagGGCGCggGCg -3'
miRNA:   3'- -CGACCG---UUGGUCGg----GagCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 193457 0.66 0.77063
Target:  5'- --aGGCGGCCgugacggcGGCUCUggCGGCaGCUGCg -3'
miRNA:   3'- cgaCCGUUGG--------UCGGGA--GCCG-CGACGa -5'
13962 5' -61 NC_003521.1 + 65895 0.66 0.77063
Target:  5'- gGCUGGCGcgcgUCAGCuCCUCgcgGGCcguguuuaGCUGCUg -3'
miRNA:   3'- -CGACCGUu---GGUCG-GGAG---CCG--------CGACGA- -5'
13962 5' -61 NC_003521.1 + 138106 0.66 0.77063
Target:  5'- gGCggGGCGGCcCAGCCg-CGGCGUgaGCg -3'
miRNA:   3'- -CGa-CCGUUG-GUCGGgaGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 152628 0.66 0.77063
Target:  5'- --gGGCGcgccgccccgGCCGGCCCcagagcagcgUCGGCGCggGCc -3'
miRNA:   3'- cgaCCGU----------UGGUCGGG----------AGCCGCGa-CGa -5'
13962 5' -61 NC_003521.1 + 73140 0.66 0.769736
Target:  5'- gGCgggGGCAGCggCGGCggcgccgCCUCGGC-CUGCg -3'
miRNA:   3'- -CGa--CCGUUG--GUCG-------GGAGCCGcGACGa -5'
13962 5' -61 NC_003521.1 + 212643 0.66 0.765251
Target:  5'- -gUGGCucuucgucgccauCCAGCCUUgGGCGgUGCa -3'
miRNA:   3'- cgACCGuu-----------GGUCGGGAgCCGCgACGa -5'
13962 5' -61 NC_003521.1 + 116582 0.66 0.761644
Target:  5'- aGCUGGUcucGCgCGGCCCUCccugcaaGuCGCUGCg -3'
miRNA:   3'- -CGACCGu--UG-GUCGGGAGc------C-GCGACGa -5'
13962 5' -61 NC_003521.1 + 71017 0.66 0.761644
Target:  5'- cGCUGGCuggaGACCGGCggaggauagucCCUCGaGCGCccaaaGCg -3'
miRNA:   3'- -CGACCG----UUGGUCG-----------GGAGC-CGCGa----CGa -5'
13962 5' -61 NC_003521.1 + 32878 0.66 0.761644
Target:  5'- uUUGGCGcCCGcGCCgC-CGGUGCUGCc -3'
miRNA:   3'- cGACCGUuGGU-CGG-GaGCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 103054 0.66 0.761644
Target:  5'- aGCUGGCGgccGCCGGCgCCgucaUCGcGCagccGCUGCc -3'
miRNA:   3'- -CGACCGU---UGGUCG-GG----AGC-CG----CGACGa -5'
13962 5' -61 NC_003521.1 + 149050 0.66 0.761644
Target:  5'- ---cGCAGCCgcGGCuCCUCGGCGCgaccGCc -3'
miRNA:   3'- cgacCGUUGG--UCG-GGAGCCGCGa---CGa -5'
13962 5' -61 NC_003521.1 + 154751 0.66 0.761644
Target:  5'- uGCUGGaggucuuGCCGGCgC-CGGCGgUGCc -3'
miRNA:   3'- -CGACCgu-----UGGUCGgGaGCCGCgACGa -5'
13962 5' -61 NC_003521.1 + 63899 0.66 0.761644
Target:  5'- gGUUGcGCGugCGGUacuucuCCaggCGGCGCUGCa -3'
miRNA:   3'- -CGAC-CGUugGUCG------GGa--GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 74172 0.66 0.761644
Target:  5'- cGCUGGcCGACUGcGCCg-CGGCGCccgGCg -3'
miRNA:   3'- -CGACC-GUUGGU-CGGgaGCCGCGa--CGa -5'
13962 5' -61 NC_003521.1 + 57181 0.66 0.752555
Target:  5'- uGCUGG-AGgCGGUgCUgCGGCGCUGUc -3'
miRNA:   3'- -CGACCgUUgGUCGgGA-GCCGCGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.