miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 181324 0.66 0.967104
Target:  5'- gGGccAGGGCGCCGUCUgguUCugUAgcugcAGCGUGa -3'
miRNA:   3'- -CC--UCCUGUGGUAGG---AGugGU-----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 201335 0.66 0.967104
Target:  5'- uGGuGGcCACCAUCgUCcACgAGGCgGCGa -3'
miRNA:   3'- -CCuCCuGUGGUAGgAG-UGgUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 39966 0.66 0.967104
Target:  5'- cGGAGGAauCGCCGUCCgUCACgGcaUGCu -3'
miRNA:   3'- -CCUCCU--GUGGUAGG-AGUGgUucGCGc -5'
13963 5' -55.6 NC_003521.1 + 53316 0.66 0.966188
Target:  5'- cGGAGGA-GCCGUCUcgUCggaucgucgugaccACCAcgccGGCGCGg -3'
miRNA:   3'- -CCUCCUgUGGUAGG--AG--------------UGGU----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 135793 0.66 0.96398
Target:  5'- --cGGGCggGCCGUCCUCG--AAGCGCu -3'
miRNA:   3'- ccuCCUG--UGGUAGGAGUggUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 204105 0.66 0.96398
Target:  5'- uGGuGG-CGCCAcugcgCCUCcaccugcucggGCCAGGCGCc -3'
miRNA:   3'- -CCuCCuGUGGUa----GGAG-----------UGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 72958 0.66 0.96398
Target:  5'- uGuGGcACGCgCAUCCUCAUCAAGUaGCc -3'
miRNA:   3'- cCuCC-UGUG-GUAGGAGUGGUUCG-CGc -5'
13963 5' -55.6 NC_003521.1 + 153591 0.66 0.96398
Target:  5'- cGAGGACACgGUCaacgUCAgCGGGCGg- -3'
miRNA:   3'- cCUCCUGUGgUAGg---AGUgGUUCGCgc -5'
13963 5' -55.6 NC_003521.1 + 217393 0.66 0.96398
Target:  5'- cGuGGGCACCG-CCagGCUGAGCgGCGg -3'
miRNA:   3'- cCuCCUGUGGUaGGagUGGUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 193345 0.66 0.962009
Target:  5'- cGAGGACuuCAacagccucaacgaguUCCUCgACCAggAGUGCGg -3'
miRNA:   3'- cCUCCUGugGU---------------AGGAG-UGGU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 148962 0.66 0.960654
Target:  5'- uGGAGGGCagcGCCAUCaucCGCgugcuGGCGCGc -3'
miRNA:   3'- -CCUCCUG---UGGUAGga-GUGgu---UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 115359 0.66 0.960654
Target:  5'- aGGAGGuCACgCGUCgCUgGCCAGG-GCc -3'
miRNA:   3'- -CCUCCuGUG-GUAG-GAgUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 129895 0.66 0.960654
Target:  5'- aGGAGGACGacgaCGgggcggCCgcgCGCCugcuGCGCGa -3'
miRNA:   3'- -CCUCCUGUg---GUa-----GGa--GUGGuu--CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 131759 0.66 0.960654
Target:  5'- uGGAGGACcagGCgGugaUCCgCAgCGAGCGCa -3'
miRNA:   3'- -CCUCCUG---UGgU---AGGaGUgGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 205606 0.66 0.960654
Target:  5'- cGAGGACGCUcgAUCCg-ACCc-GCGCGc -3'
miRNA:   3'- cCUCCUGUGG--UAGGagUGGuuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 157062 0.66 0.960654
Target:  5'- cGGGGGGCGCCG-CCacccugUC-CCAGGCcccccGCGg -3'
miRNA:   3'- -CCUCCUGUGGUaGG------AGuGGUUCG-----CGC- -5'
13963 5' -55.6 NC_003521.1 + 197855 0.66 0.960654
Target:  5'- cGGuGGGCGCCGgcgggucgCgCUCGCUggGCuGCa -3'
miRNA:   3'- -CCuCCUGUGGUa-------G-GAGUGGuuCG-CGc -5'
13963 5' -55.6 NC_003521.1 + 161060 0.66 0.960654
Target:  5'- uGA--ACGCCgGUCCUCACCGgcccGGCGCu -3'
miRNA:   3'- cCUccUGUGG-UAGGAGUGGU----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 88235 0.66 0.959616
Target:  5'- cGAGGAgGCCAUCgUgUACUccaacuacacggugGAGCGCGu -3'
miRNA:   3'- cCUCCUgUGGUAGgA-GUGG--------------UUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 185349 0.66 0.959266
Target:  5'- aGGAGGACGgCAaggcggcgcagugCCUCuuCCA-GCGCGc -3'
miRNA:   3'- -CCUCCUGUgGUa------------GGAGu-GGUuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.