miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 52547 0.66 0.970032
Target:  5'- uGGAacaacGACGCCuUCCgucgcuucaUCAUCAAGUGCGg -3'
miRNA:   3'- -CCUc----CUGUGGuAGG---------AGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 140499 0.66 0.970032
Target:  5'- aGGAaGGCGCCcgCgUCACUcAGCGgGg -3'
miRNA:   3'- -CCUcCUGUGGuaGgAGUGGuUCGCgC- -5'
13963 5' -55.6 NC_003521.1 + 148145 0.66 0.970032
Target:  5'- -aGGGAC-CCGgcaCCUCGCCGAG-GCu -3'
miRNA:   3'- ccUCCUGuGGUa--GGAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 187880 0.66 0.970032
Target:  5'- cGAGGGCAgCGUCUUCAgCUggGUGg- -3'
miRNA:   3'- cCUCCUGUgGUAGGAGU-GGuuCGCgc -5'
13963 5' -55.6 NC_003521.1 + 155481 0.66 0.970032
Target:  5'- aGAGaGACGCCggCCUgCGgCGGGcCGCGg -3'
miRNA:   3'- cCUC-CUGUGGuaGGA-GUgGUUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 163087 0.66 0.970032
Target:  5'- cGAGGccgGC-CCGUCCUCgggcGCCA-GCGCc -3'
miRNA:   3'- cCUCC---UGuGGUAGGAG----UGGUuCGCGc -5'
13963 5' -55.6 NC_003521.1 + 226893 0.66 0.970032
Target:  5'- cGGGGGCACCAcggcgGCC-AGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUaggagUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 29247 0.66 0.970032
Target:  5'- cGGGGACACCG-CCg---CGAGCGUGc -3'
miRNA:   3'- cCUCCUGUGGUaGGagugGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 26605 0.66 0.968299
Target:  5'- cGuGGGCugCAUCCUgGCCGuccucuuucaggacGUGCGg -3'
miRNA:   3'- cCuCCUGugGUAGGAgUGGUu-------------CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 187546 0.66 0.968298
Target:  5'- uGAGcGGC-CCGUCCUCcuucaggucuuuuucGCCAAGUccGCGg -3'
miRNA:   3'- cCUC-CUGuGGUAGGAG---------------UGGUUCG--CGC- -5'
13963 5' -55.6 NC_003521.1 + 78376 0.66 0.967406
Target:  5'- aGGAGGaACACCG-CCgaggcggacuggaaACCGaaAGCGCGu -3'
miRNA:   3'- -CCUCC-UGUGGUaGGag------------UGGU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 1107 0.66 0.967104
Target:  5'- uGGuGGcCACCAUCgUCcACgAGGCgGCGa -3'
miRNA:   3'- -CCuCCuGUGGUAGgAG-UGgUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 201018 0.66 0.967104
Target:  5'- cGGAGGACcgcCCGgcgCCcCGCCGAGCc-- -3'
miRNA:   3'- -CCUCCUGu--GGUa--GGaGUGGUUCGcgc -5'
13963 5' -55.6 NC_003521.1 + 39966 0.66 0.967104
Target:  5'- cGGAGGAauCGCCGUCCgUCACgGcaUGCu -3'
miRNA:   3'- -CCUCCU--GUGGUAGG-AGUGgUucGCGc -5'
13963 5' -55.6 NC_003521.1 + 201335 0.66 0.967104
Target:  5'- uGGuGGcCACCAUCgUCcACgAGGCgGCGa -3'
miRNA:   3'- -CCuCCuGUGGUAGgAG-UGgUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 181324 0.66 0.967104
Target:  5'- gGGccAGGGCGCCGUCUgguUCugUAgcugcAGCGUGa -3'
miRNA:   3'- -CC--UCCUGUGGUAGG---AGugGU-----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 153170 0.66 0.967104
Target:  5'- -cAGGAacgacuccaCGCUGUCCUCgauGCCGAuGCGCGa -3'
miRNA:   3'- ccUCCU---------GUGGUAGGAG---UGGUU-CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 153090 0.66 0.967104
Target:  5'- gGGccGGGGC-CCA-CCacgcCGCCGGGCGCGc -3'
miRNA:   3'- -CC--UCCUGuGGUaGGa---GUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 139162 0.66 0.967104
Target:  5'- ---cGACGCCAaCUUCAUCGAGaCGCGc -3'
miRNA:   3'- ccucCUGUGGUaGGAGUGGUUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 18550 0.66 0.967104
Target:  5'- gGGcucuGGGCACCAUCaCgcgcgCGCagcuggaGAGCGCGc -3'
miRNA:   3'- -CCu---CCUGUGGUAG-Ga----GUGg------UUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.