miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 161060 0.66 0.960654
Target:  5'- uGA--ACGCCgGUCCUCACCGgcccGGCGCu -3'
miRNA:   3'- cCUccUGUGG-UAGGAGUGGU----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 213859 0.66 0.975319
Target:  5'- cGGGGAacuccUACCAcugacguaCC-CGCCGGGCGCGg -3'
miRNA:   3'- cCUCCU-----GUGGUa-------GGaGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 163087 0.66 0.970032
Target:  5'- cGAGGccgGC-CCGUCCUCgggcGCCA-GCGCc -3'
miRNA:   3'- cCUCC---UGuGGUAGGAG----UGGUuCGCGc -5'
13963 5' -55.6 NC_003521.1 + 216167 0.66 0.972503
Target:  5'- aGGaAGGugACCA-CCagCGCCAggacgaaGGCGCu -3'
miRNA:   3'- -CC-UCCugUGGUaGGa-GUGGU-------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 187546 0.66 0.968298
Target:  5'- uGAGcGGC-CCGUCCUCcuucaggucuuuuucGCCAAGUccGCGg -3'
miRNA:   3'- cCUC-CUGuGGUAGGAG---------------UGGUUCG--CGC- -5'
13963 5' -55.6 NC_003521.1 + 121599 0.66 0.972768
Target:  5'- cGAGcACACCAgcuggcuggCgCUCACCAccuGGCGCa -3'
miRNA:   3'- cCUCcUGUGGUa--------G-GAGUGGU---UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 78165 0.66 0.972768
Target:  5'- cGAGG-CACgAUCCUgguggCGCCGauagAGCGUGg -3'
miRNA:   3'- cCUCCuGUGgUAGGA-----GUGGU----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 94018 0.66 0.970032
Target:  5'- cGGAGuGACGCaCAUagCUCGCCGGG-GCc -3'
miRNA:   3'- -CCUC-CUGUG-GUAg-GAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 207339 0.66 0.970032
Target:  5'- cGGGGGGCGCgucCCUCGggUCG-GCGCGg -3'
miRNA:   3'- -CCUCCUGUGguaGGAGU--GGUuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 61842 0.66 0.972768
Target:  5'- gGGAGGGCGCCG-CggaACCGcGGCGCc -3'
miRNA:   3'- -CCUCCUGUGGUaGgagUGGU-UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 201018 0.66 0.967104
Target:  5'- cGGAGGACcgcCCGgcgCCcCGCCGAGCc-- -3'
miRNA:   3'- -CCUCCUGu--GGUa--GGaGUGGUUCGcgc -5'
13963 5' -55.6 NC_003521.1 + 135793 0.66 0.96398
Target:  5'- --cGGGCggGCCGUCCUCG--AAGCGCu -3'
miRNA:   3'- ccuCCUG--UGGUAGGAGUggUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 157062 0.66 0.960654
Target:  5'- cGGGGGGCGCCG-CCacccugUC-CCAGGCcccccGCGg -3'
miRNA:   3'- -CCUCCUGUGGUaGG------AGuGGUUCG-----CGC- -5'
13963 5' -55.6 NC_003521.1 + 88235 0.66 0.959616
Target:  5'- cGAGGAgGCCAUCgUgUACUccaacuacacggugGAGCGCGu -3'
miRNA:   3'- cCUCCUgUGGUAGgA-GUGG--------------UUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 111931 0.66 0.972768
Target:  5'- ---cGACGCCGcCCUCgacuACCuGGCGCGg -3'
miRNA:   3'- ccucCUGUGGUaGGAG----UGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 186980 0.66 0.975319
Target:  5'- cGAGGACGCCGUCg-CGCggaAAGUcaGCGa -3'
miRNA:   3'- cCUCCUGUGGUAGgaGUGg--UUCG--CGC- -5'
13963 5' -55.6 NC_003521.1 + 197855 0.66 0.960654
Target:  5'- cGGuGGGCGCCGgcgggucgCgCUCGCUggGCuGCa -3'
miRNA:   3'- -CCuCCUGUGGUa-------G-GAGUGGuuCG-CGc -5'
13963 5' -55.6 NC_003521.1 + 205606 0.66 0.960654
Target:  5'- cGAGGACGCUcgAUCCg-ACCc-GCGCGc -3'
miRNA:   3'- cCUCCUGUGG--UAGGagUGGuuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 18550 0.66 0.967104
Target:  5'- gGGcucuGGGCACCAUCaCgcgcgCGCagcuggaGAGCGCGc -3'
miRNA:   3'- -CCu---CCUGUGGUAG-Ga----GUGg------UUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 185349 0.66 0.959266
Target:  5'- aGGAGGACGgCAaggcggcgcagugCCUCuuCCA-GCGCGc -3'
miRNA:   3'- -CCUCCUGUgGUa------------GGAGu-GGUuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.