miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 153090 0.66 0.967104
Target:  5'- gGGccGGGGC-CCA-CCacgcCGCCGGGCGCGc -3'
miRNA:   3'- -CC--UCCUGuGGUaGGa---GUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 115359 0.66 0.960654
Target:  5'- aGGAGGuCACgCGUCgCUgGCCAGG-GCc -3'
miRNA:   3'- -CCUCCuGUG-GUAG-GAgUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 131759 0.66 0.960654
Target:  5'- uGGAGGACcagGCgGugaUCCgCAgCGAGCGCa -3'
miRNA:   3'- -CCUCCUG---UGgU---AGGaGUgGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 204105 0.66 0.96398
Target:  5'- uGGuGG-CGCCAcugcgCCUCcaccugcucggGCCAGGCGCc -3'
miRNA:   3'- -CCuCCuGUGGUa----GGAG-----------UGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 39966 0.66 0.967104
Target:  5'- cGGAGGAauCGCCGUCCgUCACgGcaUGCu -3'
miRNA:   3'- -CCUCCU--GUGGUAGG-AGUGgUucGCGc -5'
13963 5' -55.6 NC_003521.1 + 94018 0.66 0.970032
Target:  5'- cGGAGuGACGCaCAUagCUCGCCGGG-GCc -3'
miRNA:   3'- -CCUC-CUGUG-GUAg-GAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 72958 0.66 0.96398
Target:  5'- uGuGGcACGCgCAUCCUCAUCAAGUaGCc -3'
miRNA:   3'- cCuCC-UGUG-GUAGGAGUGGUUCG-CGc -5'
13963 5' -55.6 NC_003521.1 + 201018 0.66 0.967104
Target:  5'- cGGAGGACcgcCCGgcgCCcCGCCGAGCc-- -3'
miRNA:   3'- -CCUCCUGu--GGUa--GGaGUGGUUCGcgc -5'
13963 5' -55.6 NC_003521.1 + 153170 0.66 0.967104
Target:  5'- -cAGGAacgacuccaCGCUGUCCUCgauGCCGAuGCGCGa -3'
miRNA:   3'- ccUCCU---------GUGGUAGGAG---UGGUU-CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 203209 0.66 0.970032
Target:  5'- cGGAGGcCACCAgguaaUCC-CACU--GUGCGg -3'
miRNA:   3'- -CCUCCuGUGGU-----AGGaGUGGuuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 213859 0.66 0.975319
Target:  5'- cGGGGAacuccUACCAcugacguaCC-CGCCGGGCGCGg -3'
miRNA:   3'- cCUCCU-----GUGGUa-------GGaGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 217393 0.66 0.96398
Target:  5'- cGuGGGCACCG-CCagGCUGAGCgGCGg -3'
miRNA:   3'- cCuCCUGUGGUaGGagUGGUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 148962 0.66 0.960654
Target:  5'- uGGAGGGCagcGCCAUCaucCGCgugcuGGCGCGc -3'
miRNA:   3'- -CCUCCUG---UGGUAGga-GUGgu---UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 201335 0.66 0.967104
Target:  5'- uGGuGGcCACCAUCgUCcACgAGGCgGCGa -3'
miRNA:   3'- -CCuCCuGUGGUAGgAG-UGgUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 226893 0.66 0.970032
Target:  5'- cGGGGGCACCAcggcgGCC-AGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUaggagUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 181324 0.66 0.967104
Target:  5'- gGGccAGGGCGCCGUCUgguUCugUAgcugcAGCGUGa -3'
miRNA:   3'- -CC--UCCUGUGGUAGG---AGugGU-----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 163087 0.66 0.970032
Target:  5'- cGAGGccgGC-CCGUCCUCgggcGCCA-GCGCc -3'
miRNA:   3'- cCUCC---UGuGGUAGGAG----UGGUuCGCGc -5'
13963 5' -55.6 NC_003521.1 + 187546 0.66 0.968298
Target:  5'- uGAGcGGC-CCGUCCUCcuucaggucuuuuucGCCAAGUccGCGg -3'
miRNA:   3'- cCUC-CUGuGGUAGGAG---------------UGGUUCG--CGC- -5'
13963 5' -55.6 NC_003521.1 + 207339 0.66 0.970032
Target:  5'- cGGGGGGCGCgucCCUCGggUCG-GCGCGg -3'
miRNA:   3'- -CCUCCUGUGguaGGAGU--GGUuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 140499 0.66 0.970032
Target:  5'- aGGAaGGCGCCcgCgUCACUcAGCGgGg -3'
miRNA:   3'- -CCUcCUGUGGuaGgAGUGGuUCGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.