miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 210301 1.11 0.003951
Target:  5'- uGGAGGACACCAUCCUCACCAAGCGCGa -3'
miRNA:   3'- -CCUCCUGUGGUAGGAGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 16834 0.84 0.206291
Target:  5'- uGAGGACcgACCGUCCUCGCC-GGCGCa -3'
miRNA:   3'- cCUCCUG--UGGUAGGAGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 230326 0.78 0.456209
Target:  5'- gGGGGGccACGCCAUCCcCGCC-GGCGCa -3'
miRNA:   3'- -CCUCC--UGUGGUAGGaGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 146839 0.77 0.501923
Target:  5'- uGGGGGGCGCCucGUCCUCGCCuc-CGCc -3'
miRNA:   3'- -CCUCCUGUGG--UAGGAGUGGuucGCGc -5'
13963 5' -55.6 NC_003521.1 + 233734 0.76 0.546633
Target:  5'- aGGAGGACGCCGccgccgcgucugcuUCuuCUCACCGGGgGCa -3'
miRNA:   3'- -CCUCCUGUGGU--------------AG--GAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 13153 0.75 0.57779
Target:  5'- aGGAGGACAucaguCCcgcguacaggcggGUCCUgACCAGGCGUGc -3'
miRNA:   3'- -CCUCCUGU-----GG-------------UAGGAgUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 79226 0.74 0.628127
Target:  5'- cGAGGGCACCAgaugCC-CGCgGuAGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUa---GGaGUGgU-UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 121577 0.74 0.628127
Target:  5'- --uGGGCACCAUCCaccUguUCAAGCGCGg -3'
miRNA:   3'- ccuCCUGUGGUAGG---AguGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 129702 0.74 0.628127
Target:  5'- cGAGGACGCCcgCUUCugCcGGcCGCGg -3'
miRNA:   3'- cCUCCUGUGGuaGGAGugGuUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 37397 0.74 0.636053
Target:  5'- cGAGGACGCCuucuacacgggCCUgACCGuguGGCGCGg -3'
miRNA:   3'- cCUCCUGUGGua---------GGAgUGGU---UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 131681 0.74 0.657829
Target:  5'- uGGAGGACugCG-CCUUcuGCCAgAGCGCc -3'
miRNA:   3'- -CCUCCUGugGUaGGAG--UGGU-UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 214287 0.74 0.657829
Target:  5'- aGGAGGAgGCCAggaugCCcaUCACCAcggugagcAGCGUGg -3'
miRNA:   3'- -CCUCCUgUGGUa----GG--AGUGGU--------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 90903 0.74 0.667701
Target:  5'- aGGAGGGCGCguuauCGUCCUCGUCGgaggaggggugGGCGCGg -3'
miRNA:   3'- -CCUCCUGUG-----GUAGGAGUGGU-----------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 25413 0.73 0.677546
Target:  5'- cGGAGGGCucgcCCAgCCUCACCuuccuGGUGCc -3'
miRNA:   3'- -CCUCCUGu---GGUaGGAGUGGu----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 123093 0.73 0.684417
Target:  5'- -uAGGGCacgcgcaccuccagACCGUCCUCGCCGGGcCGCu -3'
miRNA:   3'- ccUCCUG--------------UGGUAGGAGUGGUUC-GCGc -5'
13963 5' -55.6 NC_003521.1 + 106205 0.73 0.697123
Target:  5'- cGAGGugGCCAUCU---CCGAGUGCGc -3'
miRNA:   3'- cCUCCugUGGUAGGaguGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 212252 0.73 0.706839
Target:  5'- cGGGGGACACguUCCUgaacacggggucCACCAGGCuggccaggGCGa -3'
miRNA:   3'- -CCUCCUGUGguAGGA------------GUGGUUCG--------CGC- -5'
13963 5' -55.6 NC_003521.1 + 89221 0.73 0.716495
Target:  5'- cGGGGACACCggCCg-ACCuccAGCGCGg -3'
miRNA:   3'- cCUCCUGUGGuaGGagUGGu--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 65489 0.73 0.716495
Target:  5'- cGAGGugACCAggcaggcgacCUUCAUCGAGCGCu -3'
miRNA:   3'- cCUCCugUGGUa---------GGAGUGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 87119 0.73 0.716496
Target:  5'- uGGuGGACGCgCGUCC-CAagGAGCGCGa -3'
miRNA:   3'- -CCuCCUGUG-GUAGGaGUggUUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.