miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 225277 0.7 0.840834
Target:  5'- aGGuGGGCGCCc-CCUCuuCCcAGCGCGu -3'
miRNA:   3'- -CCuCCUGUGGuaGGAGu-GGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 60599 0.71 0.781734
Target:  5'- cGAGGcccacacgcgcgGCACCA-CCaaCGCCGAGCGCGa -3'
miRNA:   3'- cCUCC------------UGUGGUaGGa-GUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 218452 0.71 0.789734
Target:  5'- cGGAGGACAUgG-CCggCACCAcgccgugGGCGCa -3'
miRNA:   3'- -CCUCCUGUGgUaGGa-GUGGU-------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 240033 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 75980 0.71 0.799366
Target:  5'- cGAGGA-GCgGcCCUCGCCGGGCGCc -3'
miRNA:   3'- cCUCCUgUGgUaGGAGUGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 88320 0.71 0.816431
Target:  5'- uGAGGAUGCgGgUCUCGCCgAAGCGCa -3'
miRNA:   3'- cCUCCUGUGgUaGGAGUGG-UUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 34570 0.71 0.824732
Target:  5'- cGGGGuGCACCAggcugacgCCgggCugCAGGCGCGc -3'
miRNA:   3'- -CCUCcUGUGGUa-------GGa--GugGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 92479 0.71 0.824732
Target:  5'- cGGGGGuCucCCAgCCUCuCCGGGCGUGg -3'
miRNA:   3'- -CCUCCuGu-GGUaGGAGuGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 117991 0.71 0.824732
Target:  5'- cGAGcugcgcGACGCCAUCCacgaGCuCAAGCGCGa -3'
miRNA:   3'- cCUC------CUGUGGUAGGag--UG-GUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 110631 0.72 0.772726
Target:  5'- --cGGGCAUCGgcaUCUCGCCGGGCGCc -3'
miRNA:   3'- ccuCCUGUGGUa--GGAGUGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 42741 0.72 0.754364
Target:  5'- -aAGGGCACCGUgCgCGCCGAGgGCa -3'
miRNA:   3'- ccUCCUGUGGUAgGaGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 89221 0.73 0.716495
Target:  5'- cGGGGACACCggCCg-ACCuccAGCGCGg -3'
miRNA:   3'- cCUCCUGUGGuaGGagUGGu--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 146839 0.77 0.501923
Target:  5'- uGGGGGGCGCCucGUCCUCGCCuc-CGCc -3'
miRNA:   3'- -CCUCCUGUGG--UAGGAGUGGuucGCGc -5'
13963 5' -55.6 NC_003521.1 + 233734 0.76 0.546633
Target:  5'- aGGAGGACGCCGccgccgcgucugcuUCuuCUCACCGGGgGCa -3'
miRNA:   3'- -CCUCCUGUGGU--------------AG--GAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 79226 0.74 0.628127
Target:  5'- cGAGGGCACCAgaugCC-CGCgGuAGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUa---GGaGUGgU-UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 129702 0.74 0.628127
Target:  5'- cGAGGACGCCcgCUUCugCcGGcCGCGg -3'
miRNA:   3'- cCUCCUGUGGuaGGAGugGuUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 37397 0.74 0.636053
Target:  5'- cGAGGACGCCuucuacacgggCCUgACCGuguGGCGCGg -3'
miRNA:   3'- cCUCCUGUGGua---------GGAgUGGU---UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 214287 0.74 0.657829
Target:  5'- aGGAGGAgGCCAggaugCCcaUCACCAcggugagcAGCGUGg -3'
miRNA:   3'- -CCUCCUgUGGUa----GG--AGUGGU--------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 123093 0.73 0.684417
Target:  5'- -uAGGGCacgcgcaccuccagACCGUCCUCGCCGGGcCGCu -3'
miRNA:   3'- ccUCCUG--------------UGGUAGGAGUGGUUC-GCGc -5'
13963 5' -55.6 NC_003521.1 + 65489 0.73 0.716495
Target:  5'- cGAGGugACCAggcaggcgacCUUCAUCGAGCGCu -3'
miRNA:   3'- cCUCCugUGGUa---------GGAGUGGUUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.