miRNA display CGI


Results 1 - 20 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 210301 1.11 0.003951
Target:  5'- uGGAGGACACCAUCCUCACCAAGCGCGa -3'
miRNA:   3'- -CCUCCUGUGGUAGGAGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 155344 0.71 0.807973
Target:  5'- cGGGGGcgcgggcaccgGCACCAcgacgaccaccuUUCUCGCCG-GCGCGg -3'
miRNA:   3'- -CCUCC-----------UGUGGU------------AGGAGUGGUuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 95175 0.71 0.807973
Target:  5'- cGAGGGCACC-UCg-CGCUcGGCGCGg -3'
miRNA:   3'- cCUCCUGUGGuAGgaGUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 213859 0.66 0.975319
Target:  5'- cGGGGAacuccUACCAcugacguaCC-CGCCGGGCGCGg -3'
miRNA:   3'- cCUCCU-----GUGGUa-------GGaGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 131681 0.74 0.657829
Target:  5'- uGGAGGACugCG-CCUUcuGCCAgAGCGCc -3'
miRNA:   3'- -CCUCCUGugGUaGGAG--UGGU-UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 90903 0.74 0.667701
Target:  5'- aGGAGGGCGCguuauCGUCCUCGUCGgaggaggggugGGCGCGg -3'
miRNA:   3'- -CCUCCUGUG-----GUAGGAGUGGU-----------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 106205 0.73 0.697123
Target:  5'- cGAGGugGCCAUCU---CCGAGUGCGc -3'
miRNA:   3'- cCUCCugUGGUAGGaguGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 212252 0.73 0.706839
Target:  5'- cGGGGGACACguUCCUgaacacggggucCACCAGGCuggccaggGCGa -3'
miRNA:   3'- -CCUCCUGUGguAGGA------------GUGGUUCG--------CGC- -5'
13963 5' -55.6 NC_003521.1 + 17109 0.72 0.7636
Target:  5'- aGGAGGACACCGUgUUCgACCucaAGGaCGUGg -3'
miRNA:   3'- -CCUCCUGUGGUAgGAG-UGG---UUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 213286 0.71 0.799366
Target:  5'- cGGuGGAgACCGUCUaCGCCAccgugGGCGCc -3'
miRNA:   3'- -CCuCCUgUGGUAGGaGUGGU-----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 158714 0.71 0.781735
Target:  5'- uGGGGGACACCGUCUuuguggccuaUCACgAGGacaGCu -3'
miRNA:   3'- -CCUCCUGUGGUAGG----------AGUGgUUCg--CGc -5'
13963 5' -55.6 NC_003521.1 + 3970 0.72 0.745028
Target:  5'- cGGAGGAC-CCGggg-CACCGucAGCGCGg -3'
miRNA:   3'- -CCUCCUGuGGUaggaGUGGU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 230326 0.78 0.456209
Target:  5'- gGGGGGccACGCCAUCCcCGCC-GGCGCa -3'
miRNA:   3'- -CCUCC--UGUGGUAGGaGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 99953 0.71 0.790617
Target:  5'- aGGGGGGCGgCGgcgCCUCGgCCGAGacCGCGa -3'
miRNA:   3'- -CCUCCUGUgGUa--GGAGU-GGUUC--GCGC- -5'
13963 5' -55.6 NC_003521.1 + 13153 0.75 0.57779
Target:  5'- aGGAGGACAucaguCCcgcguacaggcggGUCCUgACCAGGCGUGc -3'
miRNA:   3'- -CCUCCUGU-----GG-------------UAGGAgUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 87119 0.73 0.716496
Target:  5'- uGGuGGACGCgCGUCC-CAagGAGCGCGa -3'
miRNA:   3'- -CCuCCUGUG-GUAGGaGUggUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 39806 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 17529 0.71 0.807973
Target:  5'- cGAGGACGCCAUCCgCugCGacuauGGUGUc -3'
miRNA:   3'- cCUCCUGUGGUAGGaGugGU-----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 121577 0.74 0.628127
Target:  5'- --uGGGCACCAUCCaccUguUCAAGCGCGg -3'
miRNA:   3'- ccuCCUGUGGUAGG---AguGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 25413 0.73 0.677546
Target:  5'- cGGAGGGCucgcCCAgCCUCACCuuccuGGUGCc -3'
miRNA:   3'- -CCUCCUGu---GGUaGGAGUGGu----UCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.