miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 791 0.66 0.967104
Target:  5'- cGGAGGACcgcCCGgcgCCcCGCCGAGCc-- -3'
miRNA:   3'- -CCUCCUGu--GGUa--GGaGUGGUUCGcgc -5'
13963 5' -55.6 NC_003521.1 + 1057 0.67 0.936239
Target:  5'- cGGGGcCACCGaCCUgCGCCAGcucucgccGCGCGa -3'
miRNA:   3'- cCUCCuGUGGUaGGA-GUGGUU--------CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 1107 0.66 0.967104
Target:  5'- uGGuGGcCACCAUCgUCcACgAGGCgGCGa -3'
miRNA:   3'- -CCuCCuGUGGUAGgAG-UGgUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 3970 0.72 0.745028
Target:  5'- cGGAGGAC-CCGggg-CACCGucAGCGCGg -3'
miRNA:   3'- -CCUCCUGuGGUaggaGUGGU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 4321 0.69 0.897681
Target:  5'- cGGGGGCucgACCGUCCaUGCCuGGCGCc -3'
miRNA:   3'- cCUCCUG---UGGUAGGaGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 12551 0.68 0.921052
Target:  5'- uGGAGGACGCCGagcgUCUggagaugC-CCGGGCGUu -3'
miRNA:   3'- -CCUCCUGUGGU----AGGa------GuGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 13153 0.75 0.57779
Target:  5'- aGGAGGACAucaguCCcgcguacaggcggGUCCUgACCAGGCGUGc -3'
miRNA:   3'- -CCUCCUGU-----GG-------------UAGGAgUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 15030 0.69 0.870859
Target:  5'- cGAGGACGCCuggcacCCUgACgAgcGGCGCGa -3'
miRNA:   3'- cCUCCUGUGGua----GGAgUGgU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 15221 0.67 0.953379
Target:  5'- -uGGGGCugCAggCg-GCCGAGCGCGa -3'
miRNA:   3'- ccUCCUGugGUagGagUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 16211 0.7 0.832869
Target:  5'- cGAGGuggcgGCGCCcugccgCCUgGCCGAGUGCGa -3'
miRNA:   3'- cCUCC-----UGUGGua----GGAgUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 16834 0.84 0.206291
Target:  5'- uGAGGACcgACCGUCCUCGCC-GGCGCa -3'
miRNA:   3'- cCUCCUG--UGGUAGGAGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 17109 0.72 0.7636
Target:  5'- aGGAGGACACCGUgUUCgACCucaAGGaCGUGg -3'
miRNA:   3'- -CCUCCUGUGGUAgGAG-UGG---UUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 17308 0.69 0.897681
Target:  5'- cGGA-GACAUCAUCCccagCACCGuucuuacagacGGCGCa -3'
miRNA:   3'- -CCUcCUGUGGUAGGa---GUGGU-----------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 17529 0.71 0.807973
Target:  5'- cGAGGACGCCAUCCgCugCGacuauGGUGUc -3'
miRNA:   3'- cCUCCUGUGGUAGGaGugGU-----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 18550 0.66 0.967104
Target:  5'- gGGcucuGGGCACCAUCaCgcgcgCGCagcuggaGAGCGCGc -3'
miRNA:   3'- -CCu---CCUGUGGUAG-Ga----GUGg------UUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 23485 0.7 0.861437
Target:  5'- cGAGGACcggccGCCGUCCgcCACCGugcugacgaucuacAGCGUGg -3'
miRNA:   3'- cCUCCUG-----UGGUAGGa-GUGGU--------------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 23547 0.7 0.863641
Target:  5'- uGGuGGugGCCAgcgccugcUCCUCGuCCGucaugguggugGGCGCGg -3'
miRNA:   3'- -CCuCCugUGGU--------AGGAGU-GGU-----------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 25413 0.73 0.677546
Target:  5'- cGGAGGGCucgcCCAgCCUCACCuuccuGGUGCc -3'
miRNA:   3'- -CCUCCUGu---GGUaGGAGUGGu----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 26426 0.7 0.856227
Target:  5'- ----aGCGCCAUUCUCACCuGGGCGCu -3'
miRNA:   3'- ccuccUGUGGUAGGAGUGG-UUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 26605 0.66 0.968299
Target:  5'- cGuGGGCugCAUCCUgGCCGuccucuuucaggacGUGCGg -3'
miRNA:   3'- cCuCCUGugGUAGGAgUGGUu-------------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.