miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 240118 0.67 0.949422
Target:  5'- gGGuGGGCGugcggUCGUCC-CGgCGGGCGCGg -3'
miRNA:   3'- -CCuCCUGU-----GGUAGGaGUgGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 240033 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 238449 0.66 0.975319
Target:  5'- aGGAGG-CGCagggcggCCUCGgCGGGCGgGg -3'
miRNA:   3'- -CCUCCuGUGgua----GGAGUgGUUCGCgC- -5'
13963 5' -55.6 NC_003521.1 + 233734 0.76 0.546633
Target:  5'- aGGAGGACGCCGccgccgcgucugcuUCuuCUCACCGGGgGCa -3'
miRNA:   3'- -CCUCCUGUGGU--------------AG--GAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 232381 0.67 0.953379
Target:  5'- cGGAGGucCACCGUCUcgCGCUggcuGCGCc -3'
miRNA:   3'- -CCUCCu-GUGGUAGGa-GUGGuu--CGCGc -5'
13963 5' -55.6 NC_003521.1 + 230326 0.78 0.456209
Target:  5'- gGGGGGccACGCCAUCCcCGCC-GGCGCa -3'
miRNA:   3'- -CCUCC--UGUGGUAGGaGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 228089 0.66 0.972768
Target:  5'- cGAGG-CGCCGgaaaCCUCGuCCAGGCuguuGCGc -3'
miRNA:   3'- cCUCCuGUGGUa---GGAGU-GGUUCG----CGC- -5'
13963 5' -55.6 NC_003521.1 + 226893 0.66 0.970032
Target:  5'- cGGGGGCACCAcggcgGCC-AGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUaggagUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 225277 0.7 0.840834
Target:  5'- aGGuGGGCGCCc-CCUCuuCCcAGCGCGu -3'
miRNA:   3'- -CCuCCUGUGGuaGGAGu-GGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 223996 0.67 0.936239
Target:  5'- cGAGGACGguCgGUCCUCAUCGAucucggaucuGCGCc -3'
miRNA:   3'- cCUCCUGU--GgUAGGAGUGGUU----------CGCGc -5'
13963 5' -55.6 NC_003521.1 + 222052 0.7 0.848623
Target:  5'- cGGGGGGCACCAgCCgUCGC--AGCaGCGa -3'
miRNA:   3'- -CCUCCUGUGGUaGG-AGUGguUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 218452 0.71 0.789734
Target:  5'- cGGAGGACAUgG-CCggCACCAcgccgugGGCGCa -3'
miRNA:   3'- -CCUCCUGUGgUaGGa-GUGGU-------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 217438 0.67 0.949422
Target:  5'- -cAGGaACACgGUgCUCuCCAGGUGCGg -3'
miRNA:   3'- ccUCC-UGUGgUAgGAGuGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 217393 0.66 0.96398
Target:  5'- cGuGGGCACCG-CCagGCUGAGCgGCGg -3'
miRNA:   3'- cCuCCUGUGGUaGGagUGGUUCG-CGC- -5'
13963 5' -55.6 NC_003521.1 + 216167 0.66 0.972503
Target:  5'- aGGaAGGugACCA-CCagCGCCAggacgaaGGCGCu -3'
miRNA:   3'- -CC-UCCugUGGUaGGa-GUGGU-------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 214287 0.74 0.657829
Target:  5'- aGGAGGAgGCCAggaugCCcaUCACCAcggugagcAGCGUGg -3'
miRNA:   3'- -CCUCCUgUGGUa----GG--AGUGGU--------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 213859 0.66 0.975319
Target:  5'- cGGGGAacuccUACCAcugacguaCC-CGCCGGGCGCGg -3'
miRNA:   3'- cCUCCU-----GUGGUa-------GGaGUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 213286 0.71 0.799366
Target:  5'- cGGuGGAgACCGUCUaCGCCAccgugGGCGCc -3'
miRNA:   3'- -CCuCCUgUGGUAGGaGUGGU-----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 212252 0.73 0.706839
Target:  5'- cGGGGGACACguUCCUgaacacggggucCACCAGGCuggccaggGCGa -3'
miRNA:   3'- -CCUCCUGUGguAGGA------------GUGGUUCG--------CGC- -5'
13963 5' -55.6 NC_003521.1 + 210301 1.11 0.003951
Target:  5'- uGGAGGACACCAUCCUCACCAAGCGCGa -3'
miRNA:   3'- -CCUCCUGUGGUAGGAGUGGUUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.