miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 27301 0.69 0.891292
Target:  5'- cGAGcugccCGCCAUCCUCACCGAcuauGUGCu -3'
miRNA:   3'- cCUCcu---GUGGUAGGAGUGGUU----CGCGc -5'
13963 5' -55.6 NC_003521.1 + 28093 0.7 0.848623
Target:  5'- uGGuGGcCACCAUCCUCugCAuGCugguacccugGCGg -3'
miRNA:   3'- -CCuCCuGUGGUAGGAGugGUuCG----------CGC- -5'
13963 5' -55.6 NC_003521.1 + 28919 0.66 0.967104
Target:  5'- aGGcuGGGACugC-UCUggaUCACCuguguAGCGCGg -3'
miRNA:   3'- -CC--UCCUGugGuAGG---AGUGGu----UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 29247 0.66 0.970032
Target:  5'- cGGGGACACCG-CCg---CGAGCGUGc -3'
miRNA:   3'- cCUCCUGUGGUaGGagugGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 29690 0.67 0.945248
Target:  5'- uGGAGGaugauccGCugCGUCCUCggcGCCuggcugcugagccucGGCGCGa -3'
miRNA:   3'- -CCUCC-------UGugGUAGGAG---UGGu--------------UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 34570 0.71 0.824732
Target:  5'- cGGGGuGCACCAggcugacgCCgggCugCAGGCGCGc -3'
miRNA:   3'- -CCUCcUGUGGUa-------GGa--GugGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 35210 0.67 0.954902
Target:  5'- aGGGGGCGCgcgggucggaucgagCGUCCUCG--GGGCGCGa -3'
miRNA:   3'- cCUCCUGUG---------------GUAGGAGUggUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 35923 0.66 0.970032
Target:  5'- uGGuGGGCGCCugGUCCUCaACgGGGaCGUa -3'
miRNA:   3'- -CCuCCUGUGG--UAGGAG-UGgUUC-GCGc -5'
13963 5' -55.6 NC_003521.1 + 35930 0.67 0.940854
Target:  5'- --cGGcCACCGUCC-CGCC--GCGCGg -3'
miRNA:   3'- ccuCCuGUGGUAGGaGUGGuuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 36164 0.7 0.86364
Target:  5'- aGGAGGACACCccggacggcGUgcccacgcaCCUgGCCGAGCGg- -3'
miRNA:   3'- -CCUCCUGUGG---------UA---------GGAgUGGUUCGCgc -5'
13963 5' -55.6 NC_003521.1 + 37397 0.74 0.636053
Target:  5'- cGAGGACGCCuucuacacgggCCUgACCGuguGGCGCGg -3'
miRNA:   3'- cCUCCUGUGGua---------GGAgUGGU---UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 38221 0.66 0.975319
Target:  5'- aGGAGG-CGCagggcggCCUCGgCGGGCGgGg -3'
miRNA:   3'- -CCUCCuGUGgua----GGAGUgGUUCGCgC- -5'
13963 5' -55.6 NC_003521.1 + 39806 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 39891 0.67 0.957122
Target:  5'- gGGuGGGCGugcggUCGUCC-CGgCGGGCGCGa -3'
miRNA:   3'- -CCuCCUGU-----GGUAGGaGUgGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 39966 0.66 0.967104
Target:  5'- cGGAGGAauCGCCGUCCgUCACgGcaUGCu -3'
miRNA:   3'- -CCUCCU--GUGGUAGG-AGUGgUucGCGc -5'
13963 5' -55.6 NC_003521.1 + 42039 0.67 0.936239
Target:  5'- aGGAGGACACUGUCUcCACaaaaAAGC-Ca -3'
miRNA:   3'- -CCUCCUGUGGUAGGaGUGg---UUCGcGc -5'
13963 5' -55.6 NC_003521.1 + 42741 0.72 0.754364
Target:  5'- -aAGGGCACCGUgCgCGCCGAGgGCa -3'
miRNA:   3'- ccUCCUGUGGUAgGaGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 44209 0.68 0.921052
Target:  5'- --cGGACGCgCAUCCUCAaCGGGCuGCu -3'
miRNA:   3'- ccuCCUGUG-GUAGGAGUgGUUCG-CGc -5'
13963 5' -55.6 NC_003521.1 + 45346 0.69 0.891292
Target:  5'- cGAGGAUACCGaUC-CACC-AGCGCu -3'
miRNA:   3'- cCUCCUGUGGUaGGaGUGGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 46044 0.68 0.915542
Target:  5'- -aGGGGCGCCAUgaCguuggCACCGGGCGgGa -3'
miRNA:   3'- ccUCCUGUGGUAg-Ga----GUGGUUCGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.