miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 3970 0.72 0.745028
Target:  5'- cGGAGGAC-CCGggg-CACCGucAGCGCGg -3'
miRNA:   3'- -CCUCCUGuGGUaggaGUGGU--UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 42741 0.72 0.754364
Target:  5'- -aAGGGCACCGUgCgCGCCGAGgGCa -3'
miRNA:   3'- ccUCCUGUGGUAgGaGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 17109 0.72 0.7636
Target:  5'- aGGAGGACACCGUgUUCgACCucaAGGaCGUGg -3'
miRNA:   3'- -CCUCCUGUGGUAgGAG-UGG---UUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 110631 0.72 0.772726
Target:  5'- --cGGGCAUCGgcaUCUCGCCGGGCGCc -3'
miRNA:   3'- ccuCCUGUGGUa--GGAGUGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 60599 0.71 0.781734
Target:  5'- cGAGGcccacacgcgcgGCACCA-CCaaCGCCGAGCGCGa -3'
miRNA:   3'- cCUCC------------UGUGGUaGGa-GUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 158714 0.71 0.781735
Target:  5'- uGGGGGACACCGUCUuuguggccuaUCACgAGGacaGCu -3'
miRNA:   3'- -CCUCCUGUGGUAGG----------AGUGgUUCg--CGc -5'
13963 5' -55.6 NC_003521.1 + 105641 0.71 0.781735
Target:  5'- aGGAGGccuucaACACCAUCCUgGgcuuCCuGGCGCa -3'
miRNA:   3'- -CCUCC------UGUGGUAGGAgU----GGuUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 218452 0.71 0.789734
Target:  5'- cGGAGGACAUgG-CCggCACCAcgccgugGGCGCa -3'
miRNA:   3'- -CCUCCUGUGgUaGGa-GUGGU-------UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 99953 0.71 0.790617
Target:  5'- aGGGGGGCGgCGgcgCCUCGgCCGAGacCGCGa -3'
miRNA:   3'- -CCUCCUGUgGUa--GGAGU-GGUUC--GCGC- -5'
13963 5' -55.6 NC_003521.1 + 39806 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 240033 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 213286 0.71 0.799366
Target:  5'- cGGuGGAgACCGUCUaCGCCAccgugGGCGCc -3'
miRNA:   3'- -CCuCCUgUGGUAGGaGUGGU-----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 75980 0.71 0.799366
Target:  5'- cGAGGA-GCgGcCCUCGCCGGGCGCc -3'
miRNA:   3'- cCUCCUgUGgUaGGAGUGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 17529 0.71 0.807973
Target:  5'- cGAGGACGCCAUCCgCugCGacuauGGUGUc -3'
miRNA:   3'- cCUCCUGUGGUAGGaGugGU-----UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 155344 0.71 0.807973
Target:  5'- cGGGGGcgcgggcaccgGCACCAcgacgaccaccuUUCUCGCCG-GCGCGg -3'
miRNA:   3'- -CCUCC-----------UGUGGU------------AGGAGUGGUuCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 95175 0.71 0.807973
Target:  5'- cGAGGGCACC-UCg-CGCUcGGCGCGg -3'
miRNA:   3'- cCUCCUGUGGuAGgaGUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 52985 0.71 0.816431
Target:  5'- uGAGGAagGCCGUCCgcaaCGCCcuGCGCa -3'
miRNA:   3'- cCUCCUg-UGGUAGGa---GUGGuuCGCGc -5'
13963 5' -55.6 NC_003521.1 + 88320 0.71 0.816431
Target:  5'- uGAGGAUGCgGgUCUCGCCgAAGCGCa -3'
miRNA:   3'- cCUCCUGUGgUaGGAGUGG-UUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 93488 0.71 0.816431
Target:  5'- cGAGGACGaagaGUCCgagggCGCCuAGCGCGu -3'
miRNA:   3'- cCUCCUGUgg--UAGGa----GUGGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 92479 0.71 0.824732
Target:  5'- cGGGGGuCucCCAgCCUCuCCGGGCGUGg -3'
miRNA:   3'- -CCUCCuGu-GGUaGGAGuGGUUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.