Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 198313 | 0.67 | 0.889601 |
Target: 5'- uCCCugGGGGU-GGGGGaUggGCGGCu -3' miRNA: 3'- -GGGugCUCCAgCCUCCaGugCGCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 122578 | 0.67 | 0.889601 |
Target: 5'- gUCACGGGGcUCGGuuucucGGUCGC-CGGCGu -3' miRNA: 3'- gGGUGCUCC-AGCCu-----CCAGUGcGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 204226 | 0.67 | 0.889601 |
Target: 5'- gCCCGCccuuggugaucaGGGGcUGGAGGaUCACGgGACu -3' miRNA: 3'- -GGGUG------------CUCCaGCCUCC-AGUGCgCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 3976 | 0.68 | 0.883125 |
Target: 5'- aCC-CGGGGcaccgucagcgCGGAGGUCugGCG-CGa -3' miRNA: 3'- gGGuGCUCCa----------GCCUCCAGugCGCuGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 114012 | 0.68 | 0.883125 |
Target: 5'- -aCGCGaAGGUgcUGGAGGUgCGCGCGGa- -3' miRNA: 3'- ggGUGC-UCCA--GCCUCCA-GUGCGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 229055 | 0.68 | 0.883125 |
Target: 5'- cCCCACGAGGaCGaAGGcagUCACccagGCGGCGu -3' miRNA: 3'- -GGGUGCUCCaGCcUCC---AGUG----CGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 229240 | 0.68 | 0.883125 |
Target: 5'- aCCCGCGGGccgCGGAGGUgCuuGCGGu- -3' miRNA: 3'- -GGGUGCUCca-GCCUCCA-GugCGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 29385 | 0.68 | 0.883125 |
Target: 5'- aCCGCGAGGccgaGGAGG--ACGaCGACGa -3' miRNA: 3'- gGGUGCUCCag--CCUCCagUGC-GCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 71262 | 0.68 | 0.876451 |
Target: 5'- uCCCGCcaacaucggcgGAGG-CGGGGG-C-CGCGGCAc -3' miRNA: 3'- -GGGUG-----------CUCCaGCCUCCaGuGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 206619 | 0.68 | 0.876451 |
Target: 5'- aCCCACGgucGGGU-GGAcGUguCGCGACAu -3' miRNA: 3'- -GGGUGC---UCCAgCCUcCAguGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 68035 | 0.68 | 0.876451 |
Target: 5'- gCCACG-GG-CGGcguGGUC-CGCGGCGc -3' miRNA: 3'- gGGUGCuCCaGCCu--CCAGuGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 170866 | 0.68 | 0.869584 |
Target: 5'- cUCCGCGGGGgcgggcgCGGGuGGUCAgGCGuCc -3' miRNA: 3'- -GGGUGCUCCa------GCCU-CCAGUgCGCuGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 103419 | 0.68 | 0.869584 |
Target: 5'- -aCAUGAGGUCGG-GGUUgAUGuCGACGc -3' miRNA: 3'- ggGUGCUCCAGCCuCCAG-UGC-GCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 78763 | 0.68 | 0.869584 |
Target: 5'- gCCACGAGGUCcGAGacGUCGCaGuCGACc -3' miRNA: 3'- gGGUGCUCCAGcCUC--CAGUG-C-GCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 210774 | 0.68 | 0.855287 |
Target: 5'- cCCCGCGuGGGUUGGGGGaCAUcucuaGgGACAc -3' miRNA: 3'- -GGGUGC-UCCAGCCUCCaGUG-----CgCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 32699 | 0.68 | 0.850856 |
Target: 5'- gCCACGgggcuaauauagcuaGGGUgGGGGG-UugGCGACGc -3' miRNA: 3'- gGGUGC---------------UCCAgCCUCCaGugCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 180561 | 0.69 | 0.840273 |
Target: 5'- cCCCACcAGGUCGuGGGcCACGuCGAUc -3' miRNA: 3'- -GGGUGcUCCAGCcUCCaGUGC-GCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 135639 | 0.69 | 0.840273 |
Target: 5'- uCCCACGAucGG-CGGGGGgcccaGCGuCGGCGg -3' miRNA: 3'- -GGGUGCU--CCaGCCUCCag---UGC-GCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 107373 | 0.69 | 0.840273 |
Target: 5'- gUCACGAGGUCcuGGA-GUUGCGUGGCu -3' miRNA: 3'- gGGUGCUCCAG--CCUcCAGUGCGCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 208894 | 0.69 | 0.832511 |
Target: 5'- aCCC-CGAGGagCGcGAGGUCAuCGCG-CGc -3' miRNA: 3'- -GGGuGCUCCa-GC-CUCCAGU-GCGCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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