miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 86269 0.67 0.918911
Target:  5'- gCCgGCGAGGcgaagUUGGGGGUgGCGCccaACAc -3'
miRNA:   3'- -GGgUGCUCC-----AGCCUCCAgUGCGc--UGU- -5'
13964 3' -57.9 NC_003521.1 + 92249 0.67 0.918911
Target:  5'- gCCGCGcGGUCuuuuGGccGGUCGCGuCGACGc -3'
miRNA:   3'- gGGUGCuCCAG----CCu-CCAGUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 53157 0.67 0.917839
Target:  5'- aCCACGucGGGgacggcggcgaGGAGGUCG-GCGACGc -3'
miRNA:   3'- gGGUGC--UCCag---------CCUCCAGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 1790 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 202017 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 152057 0.67 0.91291
Target:  5'- -aCGCGGGGuaucguggacuucUCGGAGGacCACGgCGACGu -3'
miRNA:   3'- ggGUGCUCC-------------AGCCUCCa-GUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 225622 0.67 0.907811
Target:  5'- cCCCACGAuGUCGGgauccaccacguAGGUC-UGCGAa- -3'
miRNA:   3'- -GGGUGCUcCAGCC------------UCCAGuGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 119796 0.67 0.901947
Target:  5'- gCgACGAGGUCggcgccgccgaGGAGGUCuggagcaGCGGCu -3'
miRNA:   3'- gGgUGCUCCAG-----------CCUCCAGug-----CGCUGu -5'
13964 3' -57.9 NC_003521.1 + 40345 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 55973 0.67 0.901947
Target:  5'- gCCugG-GGUCGGcaGUCGCaGCGGCGc -3'
miRNA:   3'- gGGugCuCCAGCCucCAGUG-CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 240572 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 23 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 36320 0.67 0.901947
Target:  5'- aCCCucaguCGGGG-CGuGGGGaCAUGCGACu -3'
miRNA:   3'- -GGGu----GCUCCaGC-CUCCaGUGCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 38194 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 238422 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 44364 0.67 0.901947
Target:  5'- -gC-CGAGuGccagCGGAGGuUCGCGCGGCAg -3'
miRNA:   3'- ggGuGCUC-Ca---GCCUCC-AGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 5144 0.67 0.901349
Target:  5'- uUCUuCGGGGUCGGGGGguUCAUagauacgaaagggGCGGCGa -3'
miRNA:   3'- -GGGuGCUCCAGCCUCC--AGUG-------------CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 92080 0.67 0.895876
Target:  5'- aCCG-GGGGUCGGGGGgUGCGCagGGCGg -3'
miRNA:   3'- gGGUgCUCCAGCCUCCaGUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 103442 0.67 0.895876
Target:  5'- cUCCGCcAGGUCGcGGcGGUUGCGCGcCAc -3'
miRNA:   3'- -GGGUGcUCCAGC-CU-CCAGUGCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 58876 0.67 0.895876
Target:  5'- gCCCACGA-----GAGGUgGCGCGGCGa -3'
miRNA:   3'- -GGGUGCUccagcCUCCAgUGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.