miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 55973 0.67 0.901947
Target:  5'- gCCugG-GGUCGGcaGUCGCaGCGGCGc -3'
miRNA:   3'- gGGugCuCCAGCCucCAGUG-CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 58876 0.67 0.895876
Target:  5'- gCCCACGA-----GAGGUgGCGCGGCGa -3'
miRNA:   3'- -GGGUGCUccagcCUCCAgUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 60692 0.66 0.938571
Target:  5'- gCCgCGCGGGGgaccCGGGGGcgGCGCGGg- -3'
miRNA:   3'- -GG-GUGCUCCa---GCCUCCagUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 68035 0.68 0.876451
Target:  5'- gCCACG-GG-CGGcguGGUC-CGCGGCGc -3'
miRNA:   3'- gGGUGCuCCaGCCu--CCAGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 71262 0.68 0.876451
Target:  5'- uCCCGCcaacaucggcgGAGG-CGGGGG-C-CGCGGCAc -3'
miRNA:   3'- -GGGUG-----------CUCCaGCCUCCaGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 76303 0.66 0.938571
Target:  5'- gUCCGgGuccGGcagCGGAGGUgGCgGCGACAg -3'
miRNA:   3'- -GGGUgCu--CCa--GCCUCCAgUG-CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 78763 0.68 0.869584
Target:  5'- gCCACGAGGUCcGAGacGUCGCaGuCGACc -3'
miRNA:   3'- gGGUGCUCCAGcCUC--CAGUG-C-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 80562 0.69 0.799912
Target:  5'- gCUCAUGAGGUCGucgagucccuuGAGGUaGgGCGGCAg -3'
miRNA:   3'- -GGGUGCUCCAGC-----------CUCCAgUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 83959 0.69 0.832511
Target:  5'- aUCAUGAGGugcUCGG-GGUCGgugaccCGCGACAu -3'
miRNA:   3'- gGGUGCUCC---AGCCuCCAGU------GCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 86269 0.67 0.918911
Target:  5'- gCCgGCGAGGcgaagUUGGGGGUgGCGCccaACAc -3'
miRNA:   3'- -GGgUGCUCC-----AGCCUCCAgUGCGc--UGU- -5'
13964 3' -57.9 NC_003521.1 + 87387 0.71 0.710046
Target:  5'- --gACGAGGcggCGGAGGUgACGcCGACGc -3'
miRNA:   3'- gggUGCUCCa--GCCUCCAgUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 87980 0.69 0.832511
Target:  5'- -gCGCGAGGacucggugaaUCuGGGGG-CGCGCGACGc -3'
miRNA:   3'- ggGUGCUCC----------AG-CCUCCaGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 89742 0.72 0.691122
Target:  5'- aCCCGaGGGGUCGGcGGUCcagaaacccGCGCGcACAg -3'
miRNA:   3'- -GGGUgCUCCAGCCuCCAG---------UGCGC-UGU- -5'
13964 3' -57.9 NC_003521.1 + 92080 0.67 0.895876
Target:  5'- aCCG-GGGGUCGGGGGgUGCGCagGGCGg -3'
miRNA:   3'- gGGUgCUCCAGCCUCCaGUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 92249 0.67 0.918911
Target:  5'- gCCGCGcGGUCuuuuGGccGGUCGCGuCGACGc -3'
miRNA:   3'- gGGUGCuCCAG----CCu-CCAGUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 94523 0.7 0.791408
Target:  5'- --aACGAGGUUGGAGGagACG-GACGu -3'
miRNA:   3'- gggUGCUCCAGCCUCCagUGCgCUGU- -5'
13964 3' -57.9 NC_003521.1 + 100507 0.74 0.5759
Target:  5'- aCCGCGGGcGUCGGAcggugcacGGUgGCGgGACAg -3'
miRNA:   3'- gGGUGCUC-CAGCCU--------CCAgUGCgCUGU- -5'
13964 3' -57.9 NC_003521.1 + 101117 0.72 0.643178
Target:  5'- cCCCGCGAggggggcgGGUCGGcGGG-CACGCGGa- -3'
miRNA:   3'- -GGGUGCU--------CCAGCC-UCCaGUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 103215 0.66 0.933974
Target:  5'- aCCUggAUGAGGUCGccGGcCAgGCGGCGg -3'
miRNA:   3'- -GGG--UGCUCCAGCcuCCaGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 103419 0.68 0.869584
Target:  5'- -aCAUGAGGUCGG-GGUUgAUGuCGACGc -3'
miRNA:   3'- ggGUGCUCCAGCCuCCAG-UGC-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.