miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 23 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 1790 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 3976 0.68 0.883125
Target:  5'- aCC-CGGGGcaccgucagcgCGGAGGUCugGCG-CGa -3'
miRNA:   3'- gGGuGCUCCa----------GCCUCCAGugCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 5144 0.67 0.901349
Target:  5'- uUCUuCGGGGUCGGGGGguUCAUagauacgaaagggGCGGCGa -3'
miRNA:   3'- -GGGuGCUCCAGCCUCC--AGUG-------------CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 7962 0.66 0.924144
Target:  5'- gCCGCGGugucgcGGcCGGgaGGGUC-CGCGGCGg -3'
miRNA:   3'- gGGUGCU------CCaGCC--UCCAGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 18777 0.66 0.928673
Target:  5'- aCCACGcAGGcggUGGAGGgccagcgcugcuuUCGCGUGGCc -3'
miRNA:   3'- gGGUGC-UCCa--GCCUCC-------------AGUGCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 18961 0.7 0.790551
Target:  5'- aCCCagcgacaACGAGGa-GGGGGUCgaggacgcgccGCGCGACGa -3'
miRNA:   3'- -GGG-------UGCUCCagCCUCCAG-----------UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 29385 0.68 0.883125
Target:  5'- aCCGCGAGGccgaGGAGG--ACGaCGACGa -3'
miRNA:   3'- gGGUGCUCCag--CCUCCagUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 32699 0.68 0.850856
Target:  5'- gCCACGgggcuaauauagcuaGGGUgGGGGG-UugGCGACGc -3'
miRNA:   3'- gGGUGC---------------UCCAgCCUCCaGugCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 35386 0.73 0.595033
Target:  5'- cCCCucgGCGAGGaCGcGGGcCGCGCGACAg -3'
miRNA:   3'- -GGG---UGCUCCaGCcUCCaGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 36320 0.67 0.901947
Target:  5'- aCCCucaguCGGGG-CGuGGGGaCAUGCGACu -3'
miRNA:   3'- -GGGu----GCUCCaGC-CUCCaGUGCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 37532 0.72 0.65281
Target:  5'- gUCCugGGGGUgggcagCGGGGGUCGCgGCGGa- -3'
miRNA:   3'- -GGGugCUCCA------GCCUCCAGUG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 38194 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 40345 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 44364 0.67 0.901947
Target:  5'- -gC-CGAGuGccagCGGAGGuUCGCGCGGCAg -3'
miRNA:   3'- ggGuGCUC-Ca---GCCUCC-AGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 46392 0.66 0.933974
Target:  5'- -gCGCGGGGUgCGuGGGG-CGCGCGGg- -3'
miRNA:   3'- ggGUGCUCCA-GC-CUCCaGUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 46441 0.66 0.938571
Target:  5'- uCCgGCGGGGcugCGGGGG-CugGuCGGCc -3'
miRNA:   3'- -GGgUGCUCCa--GCCUCCaGugC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 46491 0.75 0.519519
Target:  5'- gCCAUGGGGUCGGGGGUCuucuuggggUGCuGGCAc -3'
miRNA:   3'- gGGUGCUCCAGCCUCCAGu--------GCG-CUGU- -5'
13964 3' -57.9 NC_003521.1 + 49607 0.69 0.808281
Target:  5'- aCCgGCGcuGGGgacgCGGAGGaCACgGCGACGa -3'
miRNA:   3'- -GGgUGC--UCCa---GCCUCCaGUG-CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 53157 0.67 0.917839
Target:  5'- aCCACGucGGGgacggcggcgaGGAGGUCG-GCGACGc -3'
miRNA:   3'- gGGUGC--UCCag---------CCUCCAGUgCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.