miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 240572 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 238422 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 229240 0.68 0.883125
Target:  5'- aCCCGCGGGccgCGGAGGUgCuuGCGGu- -3'
miRNA:   3'- -GGGUGCUCca-GCCUCCA-GugCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 229055 0.68 0.883125
Target:  5'- cCCCACGAGGaCGaAGGcagUCACccagGCGGCGu -3'
miRNA:   3'- -GGGUGCUCCaGCcUCC---AGUG----CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 225622 0.67 0.907811
Target:  5'- cCCCACGAuGUCGGgauccaccacguAGGUC-UGCGAa- -3'
miRNA:   3'- -GGGUGCUcCAGCC------------UCCAGuGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 223489 0.66 0.924144
Target:  5'- gCCCGgGAGGUgGGGcGGaUCG-GCGACu -3'
miRNA:   3'- -GGGUgCUCCAgCCU-CC-AGUgCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 218213 0.7 0.774026
Target:  5'- gUCC-CGGGcaaCGGAGGUCAgGCGACc -3'
miRNA:   3'- -GGGuGCUCca-GCCUCCAGUgCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 212412 0.76 0.46544
Target:  5'- gCCCAgGuuGUCGGAGGcguugaUCugGCGACAc -3'
miRNA:   3'- -GGGUgCucCAGCCUCC------AGugCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 211337 0.66 0.938571
Target:  5'- uCCCGCGGgcgcgaguGGUUGG-GGUCcCGCaGCAg -3'
miRNA:   3'- -GGGUGCU--------CCAGCCuCCAGuGCGcUGU- -5'
13964 3' -57.9 NC_003521.1 + 210774 0.68 0.855287
Target:  5'- cCCCGCGuGGGUUGGGGGaCAUcucuaGgGACAc -3'
miRNA:   3'- -GGGUGC-UCCAGCCUCCaGUG-----CgCUGU- -5'
13964 3' -57.9 NC_003521.1 + 210291 0.69 0.830151
Target:  5'- gUCUGCGAGGU-GGAGGaCaccauccucaccaaGCGCGACAu -3'
miRNA:   3'- -GGGUGCUCCAgCCUCCaG--------------UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 210095 1.1 0.003486
Target:  5'- cCCCACGAGGUCGGAGGUCACGCGACAu -3'
miRNA:   3'- -GGGUGCUCCAGCCUCCAGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 209702 0.69 0.832511
Target:  5'- cUCCACGAacaggcgcuccaGGUCcgaGGAGGUCGugcgcaGCGGCAg -3'
miRNA:   3'- -GGGUGCU------------CCAG---CCUCCAGUg-----CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 208894 0.69 0.832511
Target:  5'- aCCC-CGAGGagCGcGAGGUCAuCGCG-CGc -3'
miRNA:   3'- -GGGuGCUCCa-GC-CUCCAGU-GCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 206619 0.68 0.876451
Target:  5'- aCCCACGgucGGGU-GGAcGUguCGCGACAu -3'
miRNA:   3'- -GGGUGC---UCCAgCCUcCAguGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 204226 0.67 0.889601
Target:  5'- gCCCGCccuuggugaucaGGGGcUGGAGGaUCACGgGACu -3'
miRNA:   3'- -GGGUG------------CUCCaGCCUCC-AGUGCgCUGu -5'
13964 3' -57.9 NC_003521.1 + 202017 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 198313 0.67 0.889601
Target:  5'- uCCCugGGGGU-GGGGGaUggGCGGCu -3'
miRNA:   3'- -GGGugCUCCAgCCUCCaGugCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 195412 0.66 0.938571
Target:  5'- gCCgAgGAGGU-GGAGGcCACGgcCGACGa -3'
miRNA:   3'- -GGgUgCUCCAgCCUCCaGUGC--GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 188667 0.66 0.932554
Target:  5'- aCCCGCGguaccgucgcugacGGG-CGGGGGaUACGCGGg- -3'
miRNA:   3'- -GGGUGC--------------UCCaGCCUCCaGUGCGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.