Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 210095 | 1.1 | 0.003486 |
Target: 5'- cCCCACGAGGUCGGAGGUCACGCGACAu -3' miRNA: 3'- -GGGUGCUCCAGCCUCCAGUGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 212412 | 0.76 | 0.46544 |
Target: 5'- gCCCAgGuuGUCGGAGGcguugaUCugGCGACAc -3' miRNA: 3'- -GGGUgCucCAGCCUCC------AGugCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 46491 | 0.75 | 0.519519 |
Target: 5'- gCCAUGGGGUCGGGGGUCuucuuggggUGCuGGCAc -3' miRNA: 3'- gGGUGCUCCAGCCUCCAGu--------GCG-CUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 100507 | 0.74 | 0.5759 |
Target: 5'- aCCGCGGGcGUCGGAcggugcacGGUgGCGgGACAg -3' miRNA: 3'- gGGUGCUC-CAGCCU--------CCAgUGCgCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 35386 | 0.73 | 0.595033 |
Target: 5'- cCCCucgGCGAGGaCGcGGGcCGCGCGACAg -3' miRNA: 3'- -GGG---UGCUCCaGCcUCCaGUGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 101117 | 0.72 | 0.643178 |
Target: 5'- cCCCGCGAggggggcgGGUCGGcGGG-CACGCGGa- -3' miRNA: 3'- -GGGUGCU--------CCAGCC-UCCaGUGCGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 37532 | 0.72 | 0.65281 |
Target: 5'- gUCCugGGGGUgggcagCGGGGGUCGCgGCGGa- -3' miRNA: 3'- -GGGugCUCCA------GCCUCCAGUG-CGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 89742 | 0.72 | 0.691122 |
Target: 5'- aCCCGaGGGGUCGGcGGUCcagaaacccGCGCGcACAg -3' miRNA: 3'- -GGGUgCUCCAGCCuCCAG---------UGCGC-UGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 168061 | 0.71 | 0.700609 |
Target: 5'- gCCCGucuCGuGGUaGGAGGUagaGCGCGGCAc -3' miRNA: 3'- -GGGU---GCuCCAgCCUCCAg--UGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 87387 | 0.71 | 0.710046 |
Target: 5'- --gACGAGGcggCGGAGGUgACGcCGACGc -3' miRNA: 3'- gggUGCUCCa--GCCUCCAgUGC-GCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 157041 | 0.71 | 0.710046 |
Target: 5'- --gGCGcGGUCGGAGGa-GCGCGGCGg -3' miRNA: 3'- gggUGCuCCAGCCUCCagUGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 218213 | 0.7 | 0.774026 |
Target: 5'- gUCC-CGGGcaaCGGAGGUCAgGCGACc -3' miRNA: 3'- -GGGuGCUCca-GCCUCCAGUgCGCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 18961 | 0.7 | 0.790551 |
Target: 5'- aCCCagcgacaACGAGGa-GGGGGUCgaggacgcgccGCGCGACGa -3' miRNA: 3'- -GGG-------UGCUCCagCCUCCAG-----------UGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 94523 | 0.7 | 0.791408 |
Target: 5'- --aACGAGGUUGGAGGagACG-GACGu -3' miRNA: 3'- gggUGCUCCAGCCUCCagUGCgCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 80562 | 0.69 | 0.799912 |
Target: 5'- gCUCAUGAGGUCGucgagucccuuGAGGUaGgGCGGCAg -3' miRNA: 3'- -GGGUGCUCCAGC-----------CUCCAgUgCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 126775 | 0.69 | 0.808281 |
Target: 5'- gCCACGuucaggcuGGUCgaGGAGGagaGCGCGACGg -3' miRNA: 3'- gGGUGCu-------CCAG--CCUCCag-UGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 49607 | 0.69 | 0.808281 |
Target: 5'- aCCgGCGcuGGGgacgCGGAGGaCACgGCGACGa -3' miRNA: 3'- -GGgUGC--UCCa---GCCUCCaGUG-CGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 150635 | 0.69 | 0.824587 |
Target: 5'- gCUGCGcAGG-CGGGGGcgUGCGCGACGa -3' miRNA: 3'- gGGUGC-UCCaGCCUCCa-GUGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 210291 | 0.69 | 0.830151 |
Target: 5'- gUCUGCGAGGU-GGAGGaCaccauccucaccaaGCGCGACAu -3' miRNA: 3'- -GGGUGCUCCAgCCUCCaG--------------UGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 209702 | 0.69 | 0.832511 |
Target: 5'- cUCCACGAacaggcgcuccaGGUCcgaGGAGGUCGugcgcaGCGGCAg -3' miRNA: 3'- -GGGUGCU------------CCAG---CCUCCAGUg-----CGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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