miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 208894 0.69 0.832511
Target:  5'- aCCC-CGAGGagCGcGAGGUCAuCGCG-CGc -3'
miRNA:   3'- -GGGuGCUCCa-GC-CUCCAGU-GCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 209702 0.69 0.832511
Target:  5'- cUCCACGAacaggcgcuccaGGUCcgaGGAGGUCGugcgcaGCGGCAg -3'
miRNA:   3'- -GGGUGCU------------CCAG---CCUCCAGUg-----CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 83959 0.69 0.832511
Target:  5'- aUCAUGAGGugcUCGG-GGUCGgugaccCGCGACAu -3'
miRNA:   3'- gGGUGCUCC---AGCCuCCAGU------GCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 87980 0.69 0.832511
Target:  5'- -gCGCGAGGacucggugaaUCuGGGGG-CGCGCGACGc -3'
miRNA:   3'- ggGUGCUCC----------AG-CCUCCaGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 135639 0.69 0.840273
Target:  5'- uCCCACGAucGG-CGGGGGgcccaGCGuCGGCGg -3'
miRNA:   3'- -GGGUGCU--CCaGCCUCCag---UGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 180561 0.69 0.840273
Target:  5'- cCCCACcAGGUCGuGGGcCACGuCGAUc -3'
miRNA:   3'- -GGGUGcUCCAGCcUCCaGUGC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 107373 0.69 0.840273
Target:  5'- gUCACGAGGUCcuGGA-GUUGCGUGGCu -3'
miRNA:   3'- gGGUGCUCCAG--CCUcCAGUGCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 32699 0.68 0.850856
Target:  5'- gCCACGgggcuaauauagcuaGGGUgGGGGG-UugGCGACGc -3'
miRNA:   3'- gGGUGC---------------UCCAgCCUCCaGugCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 210774 0.68 0.855287
Target:  5'- cCCCGCGuGGGUUGGGGGaCAUcucuaGgGACAc -3'
miRNA:   3'- -GGGUGC-UCCAGCCUCCaGUG-----CgCUGU- -5'
13964 3' -57.9 NC_003521.1 + 170866 0.68 0.869584
Target:  5'- cUCCGCGGGGgcgggcgCGGGuGGUCAgGCGuCc -3'
miRNA:   3'- -GGGUGCUCCa------GCCU-CCAGUgCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 78763 0.68 0.869584
Target:  5'- gCCACGAGGUCcGAGacGUCGCaGuCGACc -3'
miRNA:   3'- gGGUGCUCCAGcCUC--CAGUG-C-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 103419 0.68 0.869584
Target:  5'- -aCAUGAGGUCGG-GGUUgAUGuCGACGc -3'
miRNA:   3'- ggGUGCUCCAGCCuCCAG-UGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 68035 0.68 0.876451
Target:  5'- gCCACG-GG-CGGcguGGUC-CGCGGCGc -3'
miRNA:   3'- gGGUGCuCCaGCCu--CCAGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 206619 0.68 0.876451
Target:  5'- aCCCACGgucGGGU-GGAcGUguCGCGACAu -3'
miRNA:   3'- -GGGUGC---UCCAgCCUcCAguGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 71262 0.68 0.876451
Target:  5'- uCCCGCcaacaucggcgGAGG-CGGGGG-C-CGCGGCAc -3'
miRNA:   3'- -GGGUG-----------CUCCaGCCUCCaGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 29385 0.68 0.883125
Target:  5'- aCCGCGAGGccgaGGAGG--ACGaCGACGa -3'
miRNA:   3'- gGGUGCUCCag--CCUCCagUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 229240 0.68 0.883125
Target:  5'- aCCCGCGGGccgCGGAGGUgCuuGCGGu- -3'
miRNA:   3'- -GGGUGCUCca-GCCUCCA-GugCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 3976 0.68 0.883125
Target:  5'- aCC-CGGGGcaccgucagcgCGGAGGUCugGCG-CGa -3'
miRNA:   3'- gGGuGCUCCa----------GCCUCCAGugCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 114012 0.68 0.883125
Target:  5'- -aCGCGaAGGUgcUGGAGGUgCGCGCGGa- -3'
miRNA:   3'- ggGUGC-UCCA--GCCUCCA-GUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 229055 0.68 0.883125
Target:  5'- cCCCACGAGGaCGaAGGcagUCACccagGCGGCGu -3'
miRNA:   3'- -GGGUGCUCCaGCcUCC---AGUG----CGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.