miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 5' -50.4 NC_003521.1 + 210130 1.12 0.009515
Target:  5'- cGGCGCCGCGUUGUUAUAAGCCUCAUGa -3'
miRNA:   3'- -CCGCGGCGCAACAAUAUUCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 180227 0.78 0.712082
Target:  5'- uGGUGCCGCGcg--UGUGGGCCUCGa- -3'
miRNA:   3'- -CCGCGGCGCaacaAUAUUCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 166505 0.77 0.78046
Target:  5'- gGGCGCCGCGUccgaGUUgAUGAGCgUCAg- -3'
miRNA:   3'- -CCGCGGCGCAa---CAA-UAUUCGgAGUac -5'
13964 5' -50.4 NC_003521.1 + 55933 0.72 0.953321
Target:  5'- gGGUGCCaGCGggGUaugAGGCCUCuGUGg -3'
miRNA:   3'- -CCGCGG-CGCaaCAauaUUCGGAG-UAC- -5'
13964 5' -50.4 NC_003521.1 + 172785 0.71 0.968836
Target:  5'- gGGCGCCGCGgaccacgccgcccgUGgcgGUGAGgCUCAc- -3'
miRNA:   3'- -CCGCGGCGCa-------------ACaa-UAUUCgGAGUac -5'
13964 5' -50.4 NC_003521.1 + 65717 0.7 0.984648
Target:  5'- cGGCGCCGCGgcGgcccuGGCCggCAa- -3'
miRNA:   3'- -CCGCGGCGCaaCaauauUCGGa-GUac -5'
13964 5' -50.4 NC_003521.1 + 213801 0.7 0.980705
Target:  5'- uGCGCCGCGccug---GAGCCUCGg- -3'
miRNA:   3'- cCGCGGCGCaacaauaUUCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 77049 0.7 0.978471
Target:  5'- uGGCGCCGCuaccGUUGUUGcc-GCCgcCGUGa -3'
miRNA:   3'- -CCGCGGCG----CAACAAUauuCGGa-GUAC- -5'
13964 5' -50.4 NC_003521.1 + 46446 0.7 0.982762
Target:  5'- cGGgGCUGCGggGgcugGUcGGCCUCGUc -3'
miRNA:   3'- -CCgCGGCGCaaCaa--UAuUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 36898 0.7 0.982761
Target:  5'- aGGCaGCCGUGgUGgaagAGGCUUCGUGu -3'
miRNA:   3'- -CCG-CGGCGCaACaauaUUCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 111190 0.7 0.978471
Target:  5'- cGGCGCCGCGgacg-GUGGGCUgggCgAUGg -3'
miRNA:   3'- -CCGCGGCGCaacaaUAUUCGGa--G-UAC- -5'
13964 5' -50.4 NC_003521.1 + 105107 0.7 0.976051
Target:  5'- cGGCGagCGCGagGUUuUGAGCCUCcUGa -3'
miRNA:   3'- -CCGCg-GCGCaaCAAuAUUCGGAGuAC- -5'
13964 5' -50.4 NC_003521.1 + 32164 0.69 0.989374
Target:  5'- aGGCGcCCGCGUUGUUccAUcgaaagugcugcGGGUCgggCAUGg -3'
miRNA:   3'- -CCGC-GGCGCAACAA--UA------------UUCGGa--GUAC- -5'
13964 5' -50.4 NC_003521.1 + 30711 0.69 0.990667
Target:  5'- cGGCGCCGCGggcucaUGUcgcGUGAccuccGaCCUCGUGg -3'
miRNA:   3'- -CCGCGGCGCa-----ACAa--UAUU-----C-GGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 192238 0.69 0.990667
Target:  5'- cGGCGCCGCGggaggGUggccguuAGCCgUCAc- -3'
miRNA:   3'- -CCGCGGCGCaa---CAauau---UCGG-AGUac -5'
13964 5' -50.4 NC_003521.1 + 180530 0.69 0.989238
Target:  5'- aGGCGCUGCaggUGUUGUAguugaAGCCuagccccaccaggUCGUGg -3'
miRNA:   3'- -CCGCGGCGca-ACAAUAU-----UCGG-------------AGUAC- -5'
13964 5' -50.4 NC_003521.1 + 170961 0.69 0.990667
Target:  5'- uGGCGCUGCGcgGc----GGCCUCAUc -3'
miRNA:   3'- -CCGCGGCGCaaCaauauUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 104849 0.69 0.989374
Target:  5'- cGGUGaagGCGUUGUggacguGCCUCAUGu -3'
miRNA:   3'- -CCGCgg-CGCAACAauauu-CGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 121919 0.69 0.986374
Target:  5'- cGGCGCCGaCGagGgcg-AGGaCCUCAUGc -3'
miRNA:   3'- -CCGCGGC-GCaaCaauaUUC-GGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 203408 0.68 0.99288
Target:  5'- cGGCGCCGCGccacacgGUcAGGCC-CGUGu -3'
miRNA:   3'- -CCGCGGCGCaacaa--UA-UUCGGaGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.