miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 5' -50.4 NC_003521.1 + 5705 0.67 0.997734
Target:  5'- gGGCGCCGUcaccGggGUUAUGuguacGGCCcgggcacggcgcgugUCAUGg -3'
miRNA:   3'- -CCGCGGCG----CaaCAAUAU-----UCGG---------------AGUAC- -5'
13964 5' -50.4 NC_003521.1 + 12204 0.66 0.998573
Target:  5'- cGCGCCGCGggGUUcu---CCUCAc- -3'
miRNA:   3'- cCGCGGCGCaaCAAuauucGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 25570 0.66 0.999199
Target:  5'- aGGCgGCCGCGggGacagGUGGGCUuguUCAUc -3'
miRNA:   3'- -CCG-CGGCGCaaCaa--UAUUCGG---AGUAc -5'
13964 5' -50.4 NC_003521.1 + 30711 0.69 0.990667
Target:  5'- cGGCGCCGCGggcucaUGUcgcGUGAccuccGaCCUCGUGg -3'
miRNA:   3'- -CCGCGGCGCa-----ACAa--UAUU-----C-GGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 32164 0.69 0.989374
Target:  5'- aGGCGcCCGCGUUGUUccAUcgaaagugcugcGGGUCgggCAUGg -3'
miRNA:   3'- -CCGC-GGCGCAACAA--UA------------UUCGGa--GUAC- -5'
13964 5' -50.4 NC_003521.1 + 36898 0.7 0.982761
Target:  5'- aGGCaGCCGUGgUGgaagAGGCUUCGUGu -3'
miRNA:   3'- -CCG-CGGCGCaACaauaUUCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 43387 0.67 0.998289
Target:  5'- uGGCGCCGCc-UGgccauGGCCUCu-- -3'
miRNA:   3'- -CCGCGGCGcaACaauauUCGGAGuac -5'
13964 5' -50.4 NC_003521.1 + 46446 0.7 0.982762
Target:  5'- cGGgGCUGCGggGgcugGUcGGCCUCGUc -3'
miRNA:   3'- -CCgCGGCGCaaCaa--UAuUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 55933 0.72 0.953321
Target:  5'- gGGUGCCaGCGggGUaugAGGCCUCuGUGg -3'
miRNA:   3'- -CCGCGG-CGCaaCAauaUUCGGAG-UAC- -5'
13964 5' -50.4 NC_003521.1 + 59175 0.66 0.999199
Target:  5'- cGGCGCCGCGggcagucaggagacGUUAaauauccUGAGUCgCGUGg -3'
miRNA:   3'- -CCGCGGCGCaa------------CAAU-------AUUCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 59565 0.66 0.999024
Target:  5'- cGGCGCCGCGg------GGGUUUCGUc -3'
miRNA:   3'- -CCGCGGCGCaacaauaUUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 65717 0.7 0.984648
Target:  5'- cGGCGCCGCGgcGgcccuGGCCggCAa- -3'
miRNA:   3'- -CCGCGGCGCaaCaauauUCGGa-GUac -5'
13964 5' -50.4 NC_003521.1 + 73681 0.67 0.997958
Target:  5'- aGGCGCCcaagGCGcUGcucaaGAGCUUCGUGg -3'
miRNA:   3'- -CCGCGG----CGCaACaaua-UUCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 77049 0.7 0.978471
Target:  5'- uGGCGCCGCuaccGUUGUUGcc-GCCgcCGUGa -3'
miRNA:   3'- -CCGCGGCG----CAACAAUauuCGGa-GUAC- -5'
13964 5' -50.4 NC_003521.1 + 77097 0.67 0.997133
Target:  5'- cGGCGCCGCucaucccgacgcaggAUucGGCCUCGUGg -3'
miRNA:   3'- -CCGCGGCGcaacaa---------UAu-UCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 82038 0.67 0.996462
Target:  5'- gGGUGCUauggGUGUUGgaguagucgucggggAUGAGCUUCAUGg -3'
miRNA:   3'- -CCGCGG----CGCAACaa-------------UAUUCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 92245 0.67 0.997958
Target:  5'- gGGCGCCGCGcgGUcuuuuGGCCggucgCGUc -3'
miRNA:   3'- -CCGCGGCGCaaCAauau-UCGGa----GUAc -5'
13964 5' -50.4 NC_003521.1 + 98475 0.68 0.99605
Target:  5'- cGGCgGCCGCGgcggccgUGgcGgcGGCCUCGc- -3'
miRNA:   3'- -CCG-CGGCGCa------ACaaUauUCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 103841 0.67 0.997133
Target:  5'- aGGgGCCGCGUcuc----GGCCUCGUc -3'
miRNA:   3'- -CCgCGGCGCAacaauauUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 104849 0.69 0.989374
Target:  5'- cGGUGaagGCGUUGUggacguGCCUCAUGu -3'
miRNA:   3'- -CCGCgg-CGCAACAauauu-CGGAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.