miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 5' -50.4 NC_003521.1 + 105107 0.7 0.976051
Target:  5'- cGGCGagCGCGagGUUuUGAGCCUCcUGa -3'
miRNA:   3'- -CCGCg-GCGCaaCAAuAUUCGGAGuAC- -5'
13964 5' -50.4 NC_003521.1 + 108513 0.66 0.998794
Target:  5'- aGGCGCaCGCGggagauuUUGUU---GGCCUCcacGUGg -3'
miRNA:   3'- -CCGCG-GCGC-------AACAAuauUCGGAG---UAC- -5'
13964 5' -50.4 NC_003521.1 + 111190 0.7 0.978471
Target:  5'- cGGCGCCGCGgacg-GUGGGCUgggCgAUGg -3'
miRNA:   3'- -CCGCGGCGCaacaaUAUUCGGa--G-UAC- -5'
13964 5' -50.4 NC_003521.1 + 111951 0.66 0.999199
Target:  5'- uGGCGCgGCGgcaggAUGAGUCUguUGc -3'
miRNA:   3'- -CCGCGgCGCaacaaUAUUCGGAguAC- -5'
13964 5' -50.4 NC_003521.1 + 118921 0.66 0.999199
Target:  5'- cGGCGCCGCGgcGUgggcGGCggCGUc -3'
miRNA:   3'- -CCGCGGCGCaaCAauauUCGgaGUAc -5'
13964 5' -50.4 NC_003521.1 + 120246 0.66 0.999199
Target:  5'- cGGCgGCCGCGccGUgcaucGCCUCGa- -3'
miRNA:   3'- -CCG-CGGCGCaaCAauauuCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 121919 0.69 0.986374
Target:  5'- cGGCGCCGaCGagGgcg-AGGaCCUCAUGc -3'
miRNA:   3'- -CCGCGGC-GCaaCaauaUUC-GGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 123351 0.66 0.999199
Target:  5'- aGCGCCGCGgccGU----GGCCUCc-- -3'
miRNA:   3'- cCGCGGCGCaa-CAauauUCGGAGuac -5'
13964 5' -50.4 NC_003521.1 + 139061 0.67 0.996573
Target:  5'- cGGCGCCGCagaucacccuGGCCUCGg- -3'
miRNA:   3'- -CCGCGGCGcaacaauau-UCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 149766 0.66 0.999024
Target:  5'- gGGCgGCCGCGcg---GUAcGCCUCAa- -3'
miRNA:   3'- -CCG-CGGCGCaacaaUAUuCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 164448 0.66 0.999199
Target:  5'- gGGCGCCGCG--------GGCCUgagCAUGa -3'
miRNA:   3'- -CCGCGGCGCaacaauauUCGGA---GUAC- -5'
13964 5' -50.4 NC_003521.1 + 166505 0.77 0.78046
Target:  5'- gGGCGCCGCGUccgaGUUgAUGAGCgUCAg- -3'
miRNA:   3'- -CCGCGGCGCAa---CAA-UAUUCGgAGUac -5'
13964 5' -50.4 NC_003521.1 + 166651 0.66 0.998492
Target:  5'- gGGCGCCGCGgcGcaGcggccagcggcaccUGGGCCcCGUGg -3'
miRNA:   3'- -CCGCGGCGCaaCaaU--------------AUUCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 167180 0.66 0.998817
Target:  5'- aGGCgGCCGCGgcGg---AGGCCUUcUGc -3'
miRNA:   3'- -CCG-CGGCGCaaCaauaUUCGGAGuAC- -5'
13964 5' -50.4 NC_003521.1 + 169776 0.67 0.996628
Target:  5'- uGGCGCCGCGcuu---UGGGCgCUCGa- -3'
miRNA:   3'- -CCGCGGCGCaacaauAUUCG-GAGUac -5'
13964 5' -50.4 NC_003521.1 + 170961 0.69 0.990667
Target:  5'- uGGCGCUGCGcgGc----GGCCUCAUc -3'
miRNA:   3'- -CCGCGGCGCaaCaauauUCGGAGUAc -5'
13964 5' -50.4 NC_003521.1 + 172785 0.71 0.968836
Target:  5'- gGGCGCCGCGgaccacgccgcccgUGgcgGUGAGgCUCAc- -3'
miRNA:   3'- -CCGCGGCGCa-------------ACaa-UAUUCgGAGUac -5'
13964 5' -50.4 NC_003521.1 + 180227 0.78 0.712082
Target:  5'- uGGUGCCGCGcg--UGUGGGCCUCGa- -3'
miRNA:   3'- -CCGCGGCGCaacaAUAUUCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 180530 0.69 0.989238
Target:  5'- aGGCGCUGCaggUGUUGUAguugaAGCCuagccccaccaggUCGUGg -3'
miRNA:   3'- -CCGCGGCGca-ACAAUAU-----UCGG-------------AGUAC- -5'
13964 5' -50.4 NC_003521.1 + 191252 0.67 0.997317
Target:  5'- cGGCGCCGCGgcccacgcggcagGUgGUGcuCUUCAUGa -3'
miRNA:   3'- -CCGCGGCGCaa-----------CAaUAUucGGAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.