Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 98475 | 0.68 | 0.99605 |
Target: 5'- cGGCgGCCGCGgcggccgUGgcGgcGGCCUCGc- -3' miRNA: 3'- -CCG-CGGCGCa------ACaaUauUCGGAGUac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 82038 | 0.67 | 0.996462 |
Target: 5'- gGGUGCUauggGUGUUGgaguagucgucggggAUGAGCUUCAUGg -3' miRNA: 3'- -CCGCGG----CGCAACaa-------------UAUUCGGAGUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 139061 | 0.67 | 0.996573 |
Target: 5'- cGGCGCCGCagaucacccuGGCCUCGg- -3' miRNA: 3'- -CCGCGGCGcaacaauau-UCGGAGUac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 169776 | 0.67 | 0.996628 |
Target: 5'- uGGCGCCGCGcuu---UGGGCgCUCGa- -3' miRNA: 3'- -CCGCGGCGCaacaauAUUCG-GAGUac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 77097 | 0.67 | 0.997133 |
Target: 5'- cGGCGCCGCucaucccgacgcaggAUucGGCCUCGUGg -3' miRNA: 3'- -CCGCGGCGcaacaa---------UAu-UCGGAGUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 103841 | 0.67 | 0.997133 |
Target: 5'- aGGgGCCGCGUcuc----GGCCUCGUc -3' miRNA: 3'- -CCgCGGCGCAacaauauUCGGAGUAc -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 191252 | 0.67 | 0.997317 |
Target: 5'- cGGCGCCGCGgcccacgcggcagGUgGUGcuCUUCAUGa -3' miRNA: 3'- -CCGCGGCGCaa-----------CAaUAUucGGAGUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 5705 | 0.67 | 0.997734 |
Target: 5'- gGGCGCCGUcaccGggGUUAUGuguacGGCCcgggcacggcgcgugUCAUGg -3' miRNA: 3'- -CCGCGGCG----CaaCAAUAU-----UCGG---------------AGUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 92245 | 0.67 | 0.997958 |
Target: 5'- gGGCGCCGCGcgGUcuuuuGGCCggucgCGUc -3' miRNA: 3'- -CCGCGGCGCaaCAauau-UCGGa----GUAc -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 73681 | 0.67 | 0.997958 |
Target: 5'- aGGCGCCcaagGCGcUGcucaaGAGCUUCGUGg -3' miRNA: 3'- -CCGCGG----CGCaACaaua-UUCGGAGUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 43387 | 0.67 | 0.998289 |
Target: 5'- uGGCGCCGCc-UGgccauGGCCUCu-- -3' miRNA: 3'- -CCGCGGCGcaACaauauUCGGAGuac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 166651 | 0.66 | 0.998492 |
Target: 5'- gGGCGCCGCGgcGcaGcggccagcggcaccUGGGCCcCGUGg -3' miRNA: 3'- -CCGCGGCGCaaCaaU--------------AUUCGGaGUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 12204 | 0.66 | 0.998573 |
Target: 5'- cGCGCCGCGggGUUcu---CCUCAc- -3' miRNA: 3'- cCGCGGCGCaaCAAuauucGGAGUac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 108513 | 0.66 | 0.998794 |
Target: 5'- aGGCGCaCGCGggagauuUUGUU---GGCCUCcacGUGg -3' miRNA: 3'- -CCGCG-GCGC-------AACAAuauUCGGAG---UAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 167180 | 0.66 | 0.998817 |
Target: 5'- aGGCgGCCGCGgcGg---AGGCCUUcUGc -3' miRNA: 3'- -CCG-CGGCGCaaCaauaUUCGGAGuAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 192061 | 0.66 | 0.999024 |
Target: 5'- cGGCGuCCGCGgcgGUUugugAGGCgUCGg- -3' miRNA: 3'- -CCGC-GGCGCaa-CAAua--UUCGgAGUac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 222121 | 0.66 | 0.999024 |
Target: 5'- aGGCGCUGCGccgGgaagaAUGAGCuCUgAUGa -3' miRNA: 3'- -CCGCGGCGCaa-Caa---UAUUCG-GAgUAC- -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 149766 | 0.66 | 0.999024 |
Target: 5'- gGGCgGCCGCGcg---GUAcGCCUCAa- -3' miRNA: 3'- -CCG-CGGCGCaacaaUAUuCGGAGUac -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 59565 | 0.66 | 0.999024 |
Target: 5'- cGGCGCCGCGg------GGGUUUCGUc -3' miRNA: 3'- -CCGCGGCGCaacaauaUUCGGAGUAc -5' |
|||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 219166 | 0.66 | 0.999149 |
Target: 5'- aGGCGCCGCagcgUGUUccaGUGgcggcugagccccaGGCC-CAUGa -3' miRNA: 3'- -CCGCGGCGca--ACAA---UAU--------------UCGGaGUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home