Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 5705 | 0.67 | 0.997734 |
Target: 5'- gGGCGCCGUcaccGggGUUAUGuguacGGCCcgggcacggcgcgugUCAUGg -3' miRNA: 3'- -CCGCGGCG----CaaCAAUAU-----UCGG---------------AGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 191252 | 0.67 | 0.997317 |
Target: 5'- cGGCGCCGCGgcccacgcggcagGUgGUGcuCUUCAUGa -3' miRNA: 3'- -CCGCGGCGCaa-----------CAaUAUucGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 103841 | 0.67 | 0.997133 |
Target: 5'- aGGgGCCGCGUcuc----GGCCUCGUc -3' miRNA: 3'- -CCgCGGCGCAacaauauUCGGAGUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 77097 | 0.67 | 0.997133 |
Target: 5'- cGGCGCCGCucaucccgacgcaggAUucGGCCUCGUGg -3' miRNA: 3'- -CCGCGGCGcaacaa---------UAu-UCGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 169776 | 0.67 | 0.996628 |
Target: 5'- uGGCGCCGCGcuu---UGGGCgCUCGa- -3' miRNA: 3'- -CCGCGGCGCaacaauAUUCG-GAGUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 139061 | 0.67 | 0.996573 |
Target: 5'- cGGCGCCGCagaucacccuGGCCUCGg- -3' miRNA: 3'- -CCGCGGCGcaacaauau-UCGGAGUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 82038 | 0.67 | 0.996462 |
Target: 5'- gGGUGCUauggGUGUUGgaguagucgucggggAUGAGCUUCAUGg -3' miRNA: 3'- -CCGCGG----CGCAACaa-------------UAUUCGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 98475 | 0.68 | 0.99605 |
Target: 5'- cGGCgGCCGCGgcggccgUGgcGgcGGCCUCGc- -3' miRNA: 3'- -CCG-CGGCGCa------ACaaUauUCGGAGUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 203408 | 0.68 | 0.99288 |
Target: 5'- cGGCGCCGCGccacacgGUcAGGCC-CGUGu -3' miRNA: 3'- -CCGCGGCGCaacaa--UA-UUCGGaGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 30711 | 0.69 | 0.990667 |
Target: 5'- cGGCGCCGCGggcucaUGUcgcGUGAccuccGaCCUCGUGg -3' miRNA: 3'- -CCGCGGCGCa-----ACAa--UAUU-----C-GGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 192238 | 0.69 | 0.990667 |
Target: 5'- cGGCGCCGCGggaggGUggccguuAGCCgUCAc- -3' miRNA: 3'- -CCGCGGCGCaa---CAauau---UCGG-AGUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 170961 | 0.69 | 0.990667 |
Target: 5'- uGGCGCUGCGcgGc----GGCCUCAUc -3' miRNA: 3'- -CCGCGGCGCaaCaauauUCGGAGUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 32164 | 0.69 | 0.989374 |
Target: 5'- aGGCGcCCGCGUUGUUccAUcgaaagugcugcGGGUCgggCAUGg -3' miRNA: 3'- -CCGC-GGCGCAACAA--UA------------UUCGGa--GUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 104849 | 0.69 | 0.989374 |
Target: 5'- cGGUGaagGCGUUGUggacguGCCUCAUGu -3' miRNA: 3'- -CCGCgg-CGCAACAauauu-CGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 180530 | 0.69 | 0.989238 |
Target: 5'- aGGCGCUGCaggUGUUGUAguugaAGCCuagccccaccaggUCGUGg -3' miRNA: 3'- -CCGCGGCGca-ACAAUAU-----UCGG-------------AGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 121919 | 0.69 | 0.986374 |
Target: 5'- cGGCGCCGaCGagGgcg-AGGaCCUCAUGc -3' miRNA: 3'- -CCGCGGC-GCaaCaauaUUC-GGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 65717 | 0.7 | 0.984648 |
Target: 5'- cGGCGCCGCGgcGgcccuGGCCggCAa- -3' miRNA: 3'- -CCGCGGCGCaaCaauauUCGGa-GUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 46446 | 0.7 | 0.982762 |
Target: 5'- cGGgGCUGCGggGgcugGUcGGCCUCGUc -3' miRNA: 3'- -CCgCGGCGCaaCaa--UAuUCGGAGUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 36898 | 0.7 | 0.982761 |
Target: 5'- aGGCaGCCGUGgUGgaagAGGCUUCGUGu -3' miRNA: 3'- -CCG-CGGCGCaACaauaUUCGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 213801 | 0.7 | 0.980705 |
Target: 5'- uGCGCCGCGccug---GAGCCUCGg- -3' miRNA: 3'- cCGCGGCGCaacaauaUUCGGAGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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