Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13964 | 5' | -50.4 | NC_003521.1 | + | 123351 | 0.66 | 0.999199 |
Target: 5'- aGCGCCGCGgccGU----GGCCUCc-- -3' miRNA: 3'- cCGCGGCGCaa-CAauauUCGGAGuac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 121919 | 0.69 | 0.986374 |
Target: 5'- cGGCGCCGaCGagGgcg-AGGaCCUCAUGc -3' miRNA: 3'- -CCGCGGC-GCaaCaauaUUC-GGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 120246 | 0.66 | 0.999199 |
Target: 5'- cGGCgGCCGCGccGUgcaucGCCUCGa- -3' miRNA: 3'- -CCG-CGGCGCaaCAauauuCGGAGUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 118921 | 0.66 | 0.999199 |
Target: 5'- cGGCGCCGCGgcGUgggcGGCggCGUc -3' miRNA: 3'- -CCGCGGCGCaaCAauauUCGgaGUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 111951 | 0.66 | 0.999199 |
Target: 5'- uGGCGCgGCGgcaggAUGAGUCUguUGc -3' miRNA: 3'- -CCGCGgCGCaacaaUAUUCGGAguAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 111190 | 0.7 | 0.978471 |
Target: 5'- cGGCGCCGCGgacg-GUGGGCUgggCgAUGg -3' miRNA: 3'- -CCGCGGCGCaacaaUAUUCGGa--G-UAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 108513 | 0.66 | 0.998794 |
Target: 5'- aGGCGCaCGCGggagauuUUGUU---GGCCUCcacGUGg -3' miRNA: 3'- -CCGCG-GCGC-------AACAAuauUCGGAG---UAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 105107 | 0.7 | 0.976051 |
Target: 5'- cGGCGagCGCGagGUUuUGAGCCUCcUGa -3' miRNA: 3'- -CCGCg-GCGCaaCAAuAUUCGGAGuAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 104849 | 0.69 | 0.989374 |
Target: 5'- cGGUGaagGCGUUGUggacguGCCUCAUGu -3' miRNA: 3'- -CCGCgg-CGCAACAauauu-CGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 103841 | 0.67 | 0.997133 |
Target: 5'- aGGgGCCGCGUcuc----GGCCUCGUc -3' miRNA: 3'- -CCgCGGCGCAacaauauUCGGAGUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 98475 | 0.68 | 0.99605 |
Target: 5'- cGGCgGCCGCGgcggccgUGgcGgcGGCCUCGc- -3' miRNA: 3'- -CCG-CGGCGCa------ACaaUauUCGGAGUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 92245 | 0.67 | 0.997958 |
Target: 5'- gGGCGCCGCGcgGUcuuuuGGCCggucgCGUc -3' miRNA: 3'- -CCGCGGCGCaaCAauau-UCGGa----GUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 82038 | 0.67 | 0.996462 |
Target: 5'- gGGUGCUauggGUGUUGgaguagucgucggggAUGAGCUUCAUGg -3' miRNA: 3'- -CCGCGG----CGCAACaa-------------UAUUCGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 77097 | 0.67 | 0.997133 |
Target: 5'- cGGCGCCGCucaucccgacgcaggAUucGGCCUCGUGg -3' miRNA: 3'- -CCGCGGCGcaacaa---------UAu-UCGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 77049 | 0.7 | 0.978471 |
Target: 5'- uGGCGCCGCuaccGUUGUUGcc-GCCgcCGUGa -3' miRNA: 3'- -CCGCGGCG----CAACAAUauuCGGa-GUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 73681 | 0.67 | 0.997958 |
Target: 5'- aGGCGCCcaagGCGcUGcucaaGAGCUUCGUGg -3' miRNA: 3'- -CCGCGG----CGCaACaaua-UUCGGAGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 65717 | 0.7 | 0.984648 |
Target: 5'- cGGCGCCGCGgcGgcccuGGCCggCAa- -3' miRNA: 3'- -CCGCGGCGCaaCaauauUCGGa-GUac -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 59565 | 0.66 | 0.999024 |
Target: 5'- cGGCGCCGCGg------GGGUUUCGUc -3' miRNA: 3'- -CCGCGGCGCaacaauaUUCGGAGUAc -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 59175 | 0.66 | 0.999199 |
Target: 5'- cGGCGCCGCGggcagucaggagacGUUAaauauccUGAGUCgCGUGg -3' miRNA: 3'- -CCGCGGCGCaa------------CAAU-------AUUCGGaGUAC- -5' |
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13964 | 5' | -50.4 | NC_003521.1 | + | 55933 | 0.72 | 0.953321 |
Target: 5'- gGGUGCCaGCGggGUaugAGGCCUCuGUGg -3' miRNA: 3'- -CCGCGG-CGCaaCAauaUUCGGAG-UAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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