miRNA display CGI


Results 41 - 48 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 5' -50.4 NC_003521.1 + 192061 0.66 0.999024
Target:  5'- cGGCGuCCGCGgcgGUUugugAGGCgUCGg- -3'
miRNA:   3'- -CCGC-GGCGCaa-CAAua--UUCGgAGUac -5'
13964 5' -50.4 NC_003521.1 + 192238 0.69 0.990667
Target:  5'- cGGCGCCGCGggaggGUggccguuAGCCgUCAc- -3'
miRNA:   3'- -CCGCGGCGCaa---CAauau---UCGG-AGUac -5'
13964 5' -50.4 NC_003521.1 + 203408 0.68 0.99288
Target:  5'- cGGCGCCGCGccacacgGUcAGGCC-CGUGu -3'
miRNA:   3'- -CCGCGGCGCaacaa--UA-UUCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 210130 1.12 0.009515
Target:  5'- cGGCGCCGCGUUGUUAUAAGCCUCAUGa -3'
miRNA:   3'- -CCGCGGCGCAACAAUAUUCGGAGUAC- -5'
13964 5' -50.4 NC_003521.1 + 211883 0.66 0.999346
Target:  5'- gGGCGCCGCGcgUGgUAUAGugcGCCa---- -3'
miRNA:   3'- -CCGCGGCGCa-ACaAUAUU---CGGaguac -5'
13964 5' -50.4 NC_003521.1 + 213801 0.7 0.980705
Target:  5'- uGCGCCGCGccug---GAGCCUCGg- -3'
miRNA:   3'- cCGCGGCGCaacaauaUUCGGAGUac -5'
13964 5' -50.4 NC_003521.1 + 219166 0.66 0.999149
Target:  5'- aGGCGCCGCagcgUGUUccaGUGgcggcugagccccaGGCC-CAUGa -3'
miRNA:   3'- -CCGCGGCGca--ACAA---UAU--------------UCGGaGUAC- -5'
13964 5' -50.4 NC_003521.1 + 222121 0.66 0.999024
Target:  5'- aGGCGCUGCGccgGgaagaAUGAGCuCUgAUGa -3'
miRNA:   3'- -CCGCGGCGCaa-Caa---UAUUCG-GAgUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.