Results 61 - 80 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 53968 | 0.67 | 0.837005 |
Target: 5'- gUC-CUUGCCGUGGUcgugaucGCGCUCGacguuGCCCa -3' miRNA: 3'- -AGcGGACGGCGUCAa------UGCGAGC-----CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 34587 | 0.67 | 0.837005 |
Target: 5'- aCGCCggGCUGCAGgcGCGCgcagaUGGaCUCg -3' miRNA: 3'- aGCGGa-CGGCGUCaaUGCGa----GCC-GGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 118316 | 0.67 | 0.837005 |
Target: 5'- -gGCCUGcCCGCcGccGCGUU-GGCCCu -3' miRNA: 3'- agCGGAC-GGCGuCaaUGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 145576 | 0.67 | 0.837005 |
Target: 5'- aCGUgCUGCgGCGGcacgACGCggCGGCCg -3' miRNA: 3'- aGCG-GACGgCGUCaa--UGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 202602 | 0.67 | 0.837005 |
Target: 5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3' miRNA: 3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 221434 | 0.67 | 0.837005 |
Target: 5'- aUCGUgUGCCugggGCuGcUGCGCUgGGCCg -3' miRNA: 3'- -AGCGgACGG----CGuCaAUGCGAgCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 112698 | 0.67 | 0.837005 |
Target: 5'- cCGCCUggGCCGCcugAGcggGCG-UCGGUCCg -3' miRNA: 3'- aGCGGA--CGGCG---UCaa-UGCgAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 143028 | 0.67 | 0.837005 |
Target: 5'- aCGCC-GCCGCGG--ACGCU-GGUCa -3' miRNA: 3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 38577 | 0.67 | 0.837005 |
Target: 5'- aUCGCCcuugGCCGU----GC-CUCGGCCUg -3' miRNA: 3'- -AGCGGa---CGGCGucaaUGcGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 238713 | 0.67 | 0.837005 |
Target: 5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3' miRNA: 3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 145922 | 0.67 | 0.837005 |
Target: 5'- cUCGCggGCCGaGGgcaccucGCGCUCGGCgCg -3' miRNA: 3'- -AGCGgaCGGCgUCaa-----UGCGAGCCGgG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 186354 | 0.67 | 0.83466 |
Target: 5'- aUCGUaCUGCgGCAGgcgucgauaaccauCGCcccgUCGGCCCa -3' miRNA: 3'- -AGCG-GACGgCGUCaau-----------GCG----AGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 223838 | 0.67 | 0.82913 |
Target: 5'- gCGCCUGCUgucccuGCGGcUGCuGCUgCGGCUg -3' miRNA: 3'- aGCGGACGG------CGUCaAUG-CGA-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 226448 | 0.67 | 0.82913 |
Target: 5'- -aGCa-GCUGCAG-UGCGUcUGGCCCu -3' miRNA: 3'- agCGgaCGGCGUCaAUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 210114 | 0.67 | 0.82913 |
Target: 5'- gCGCuacgagguagagCUGCCGCaAGUggACGCUCGGaUCUc -3' miRNA: 3'- aGCG------------GACGGCG-UCAa-UGCGAGCC-GGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 116866 | 0.67 | 0.82913 |
Target: 5'- aCGaCCUGCgcgCGCAGUgGCGCggcugcggCGGCgCg -3' miRNA: 3'- aGC-GGACG---GCGUCAaUGCGa-------GCCGgG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 219179 | 0.67 | 0.82913 |
Target: 5'- -aGCCUGCugaCGCAGUcgagacccugGCGggCGGCCUc -3' miRNA: 3'- agCGGACG---GCGUCAa---------UGCgaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 130211 | 0.67 | 0.82913 |
Target: 5'- -gGCCcGCgGCAGaacUGCGCcgucUCGGCCa -3' miRNA: 3'- agCGGaCGgCGUCa--AUGCG----AGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 150097 | 0.67 | 0.824327 |
Target: 5'- aCGCCgaUGCUGCuGUUGCaGCUgcagcaggucggucaCGGCCg -3' miRNA: 3'- aGCGG--ACGGCGuCAAUG-CGA---------------GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 17105 | 0.67 | 0.821094 |
Target: 5'- cCGCCUGCgC-CGGcgaggACGgUCGGUCCu -3' miRNA: 3'- aGCGGACG-GcGUCaa---UGCgAGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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