miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 223677 0.66 0.859602
Target:  5'- -aGCUUugacGCCGCGccGggGCGCcacaCGGCCCg -3'
miRNA:   3'- agCGGA----CGGCGU--CaaUGCGa---GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150520 0.66 0.859602
Target:  5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3'
miRNA:   3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 24476 0.66 0.859602
Target:  5'- cCGCUggUGCUGCuGUUggacgACGUUCcGCCCa -3'
miRNA:   3'- aGCGG--ACGGCGuCAA-----UGCGAGcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 124418 0.66 0.859602
Target:  5'- aUCGCCUGCacgGCAGcgGCgGCggaggcagCGGCgCg -3'
miRNA:   3'- -AGCGGACGg--CGUCaaUG-CGa-------GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 105861 0.66 0.859602
Target:  5'- gCGCCUGa-GCGGcUGCGC-CGGCg- -3'
miRNA:   3'- aGCGGACggCGUCaAUGCGaGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 100184 0.66 0.859602
Target:  5'- gCGCCaGgCGCAG--GCuCUCGGCCg -3'
miRNA:   3'- aGCGGaCgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 118039 0.66 0.859602
Target:  5'- cCGCCagggGuCCGCA-UUGCuCUCGGCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUcAAUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 168255 0.66 0.857415
Target:  5'- aCGCgUUGCCGCAcGagGCGCUgaucuggaucugcaCGGCCg -3'
miRNA:   3'- aGCG-GACGGCGU-CaaUGCGA--------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 163383 0.66 0.852247
Target:  5'- aUGCCcgaggagGCgGCGGUggucgugGCGCUgGcGCCCg -3'
miRNA:   3'- aGCGGa------CGgCGUCAa------UGCGAgC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 64219 0.66 0.852247
Target:  5'- gCGCCgcGCCaGCAGcuccACGCUCaGCCg -3'
miRNA:   3'- aGCGGa-CGG-CGUCaa--UGCGAGcCGGg -5'
13965 3' -59.4 NC_003521.1 + 186612 0.66 0.852247
Target:  5'- aCGCCUGCCGCAGU-ACGaugaguaucCGGgaCa -3'
miRNA:   3'- aGCGGACGGCGUCAaUGCga-------GCCggG- -5'
13965 3' -59.4 NC_003521.1 + 234353 0.66 0.852247
Target:  5'- -gGCCUGaCGCAGccaGCGCUC-GCCg -3'
miRNA:   3'- agCGGACgGCGUCaa-UGCGAGcCGGg -5'
13965 3' -59.4 NC_003521.1 + 162298 0.66 0.852247
Target:  5'- aCGCCgggaGuCCGCGGaauccGCGUcgcguguccggUCGGCCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUCaa---UGCG-----------AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 102501 0.66 0.852247
Target:  5'- gUCGCgCaGCCGCAGguccAUG-UCGGCCa -3'
miRNA:   3'- -AGCG-GaCGGCGUCaa--UGCgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 78786 0.66 0.852247
Target:  5'- gUCGaCCucgaUGUCGCAGgucgACGagCGGCCCu -3'
miRNA:   3'- -AGC-GG----ACGGCGUCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 32888 0.66 0.852247
Target:  5'- gCGCC-GCCGguGcUGcCGC-CGuGCCCg -3'
miRNA:   3'- aGCGGaCGGCguCaAU-GCGaGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 43119 0.66 0.852247
Target:  5'- -aGCgCUGCgGCGa--GCGCUCGGCgCu -3'
miRNA:   3'- agCG-GACGgCGUcaaUGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 77489 0.67 0.844713
Target:  5'- cCGCUacaaccGCCGCuAGUgcCGCUCGcGCCg -3'
miRNA:   3'- aGCGGa-----CGGCG-UCAauGCGAGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 144466 0.67 0.843949
Target:  5'- gCGCaCUGCUGCAGcUUgccguucuccagcGCGCggcaggCGGCgCCg -3'
miRNA:   3'- aGCG-GACGGCGUC-AA-------------UGCGa-----GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 56011 0.67 0.840108
Target:  5'- gCGCCUGUCGCugccgcccgcgcgcuGGgagGCGCUgCGcGCCg -3'
miRNA:   3'- aGCGGACGGCG---------------UCaa-UGCGA-GC-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.