miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 109977 0.66 0.873755
Target:  5'- gCGCCUGCaGUAGggcgGCcuGC-CGGUCCa -3'
miRNA:   3'- aGCGGACGgCGUCaa--UG--CGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 119187 0.66 0.866774
Target:  5'- aCGCC-GCCGCcc--ACGCcgCGGCgCCg -3'
miRNA:   3'- aGCGGaCGGCGucaaUGCGa-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 204384 0.66 0.866774
Target:  5'- gCGCCUgGCCcgagcagguggaggcGCAGUgGCGCcaccaggugcacgUGGCCCa -3'
miRNA:   3'- aGCGGA-CGG---------------CGUCAaUGCGa------------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 43448 0.66 0.866774
Target:  5'- gUUGCacagGUCGCGGUgGCGCUCGuGCg- -3'
miRNA:   3'- -AGCGga--CGGCGUCAaUGCGAGC-CGgg -5'
13965 3' -59.4 NC_003521.1 + 34998 0.66 0.866774
Target:  5'- cCGCCUGUCGguaccCGGUguucguggACGCgcaCGGCgCCg -3'
miRNA:   3'- aGCGGACGGC-----GUCAa-------UGCGa--GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 209958 0.66 0.866774
Target:  5'- gCGCCUGUucguggaGCAgcGUUACGUgcucUUGGCCUa -3'
miRNA:   3'- aGCGGACGg------CGU--CAAUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 75552 0.66 0.866774
Target:  5'- gCGCCgGCgGCGGcUACGC-CaGcGCCCu -3'
miRNA:   3'- aGCGGaCGgCGUCaAUGCGaG-C-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 137520 0.66 0.866774
Target:  5'- cCGCuCUGcCCGCuGc--CGCcgUCGGCCCc -3'
miRNA:   3'- aGCG-GAC-GGCGuCaauGCG--AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 146179 0.66 0.866774
Target:  5'- cCGCgaGuuGCuGgccgGCGgaCGGCCCu -3'
miRNA:   3'- aGCGgaCggCGuCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 78018 0.66 0.866774
Target:  5'- cUUGCgCUGaCC-CAGaUACaGCUCGGCCa -3'
miRNA:   3'- -AGCG-GAC-GGcGUCaAUG-CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 172320 0.66 0.866774
Target:  5'- aCGCCgcUGgCGCAG--GC-CUCGGCCg -3'
miRNA:   3'- aGCGG--ACgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 129775 0.66 0.866774
Target:  5'- gCGCCUGucCCGCGcacgUGCGCgccgaGGCCg -3'
miRNA:   3'- aGCGGAC--GGCGUca--AUGCGag---CCGGg -5'
13965 3' -59.4 NC_003521.1 + 73627 0.66 0.866065
Target:  5'- gCGCCUGCCagcccaaGCAGaaggccucCGCcgCGGCCg -3'
miRNA:   3'- aGCGGACGG-------CGUCaau-----GCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 118176 0.66 0.864642
Target:  5'- gCGCaCcGCCGUGGUUcuugagcuuuuuccGCGCcCGGCCg -3'
miRNA:   3'- aGCG-GaCGGCGUCAA--------------UGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145651 0.66 0.859602
Target:  5'- gCGCCgagCGCgAGgUGCcCUCGGCCCg -3'
miRNA:   3'- aGCGGacgGCG-UCaAUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 105174 0.66 0.859602
Target:  5'- aCGCC-GCCG-----ACGCUgGGCCCc -3'
miRNA:   3'- aGCGGaCGGCgucaaUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150520 0.66 0.859602
Target:  5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3'
miRNA:   3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 118039 0.66 0.859602
Target:  5'- cCGCCagggGuCCGCA-UUGCuCUCGGCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUcAAUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 142241 0.66 0.859602
Target:  5'- -aGCUcccGCUGCAGcuccugACGCUCGucGCCCa -3'
miRNA:   3'- agCGGa--CGGCGUCaa----UGCGAGC--CGGG- -5'
13965 3' -59.4 NC_003521.1 + 223677 0.66 0.859602
Target:  5'- -aGCUUugacGCCGCGccGggGCGCcacaCGGCCCg -3'
miRNA:   3'- agCGGA----CGGCGU--CaaUGCGa---GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.