miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 33537 0.68 0.760929
Target:  5'- cUCGCagCUGCUGCAcgaucGCGC-CGGCCUg -3'
miRNA:   3'- -AGCG--GACGGCGUcaa--UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 34587 0.67 0.837005
Target:  5'- aCGCCggGCUGCAGgcGCGCgcagaUGGaCUCg -3'
miRNA:   3'- aGCGGa-CGGCGUCaaUGCGa----GCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 34791 0.7 0.666953
Target:  5'- gUCGCC-GCuCGC----GCGuCUCGGCCCg -3'
miRNA:   3'- -AGCGGaCG-GCGucaaUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 34998 0.66 0.866774
Target:  5'- cCGCCUGUCGguaccCGGUguucguggACGCgcaCGGCgCCg -3'
miRNA:   3'- aGCGGACGGC-----GUCAa-------UGCGa--GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 35910 0.72 0.532444
Target:  5'- cUCGCCUGCCGCucgcaGCGCgugCGGgaCCu -3'
miRNA:   3'- -AGCGGACGGCGucaa-UGCGa--GCCg-GG- -5'
13965 3' -59.4 NC_003521.1 + 38577 0.67 0.837005
Target:  5'- aUCGCCcuugGCCGU----GC-CUCGGCCUg -3'
miRNA:   3'- -AGCGGa---CGGCGucaaUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 40780 0.67 0.821094
Target:  5'- gUCGCC-GCUGCuggaggaguucgAGaUGCGCUgCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCG------------UCaAUGCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 43119 0.66 0.852247
Target:  5'- -aGCgCUGCgGCGa--GCGCUCGGCgCu -3'
miRNA:   3'- agCG-GACGgCGUcaaUGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 43376 0.7 0.686192
Target:  5'- gCGCUcGCCGCA---GCGCUUGGUCa -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 43448 0.66 0.866774
Target:  5'- gUUGCacagGUCGCGGUgGCGCUCGuGCg- -3'
miRNA:   3'- -AGCGga--CGGCGUCAaUGCGAGC-CGgg -5'
13965 3' -59.4 NC_003521.1 + 43745 0.67 0.821094
Target:  5'- cCGCCgcgGCCaGCAcGgccgccGCGCU-GGCCCg -3'
miRNA:   3'- aGCGGa--CGG-CGU-Caa----UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 43838 0.72 0.521247
Target:  5'- cCGCCgGCCGCGGgcccgucacagGCGCccCGGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa---------UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 45962 0.7 0.686192
Target:  5'- aUCGUC-GCCGCGGUacggugucCGCUCGGUguCCg -3'
miRNA:   3'- -AGCGGaCGGCGUCAau------GCGAGCCG--GG- -5'
13965 3' -59.4 NC_003521.1 + 46442 0.66 0.873755
Target:  5'- cCGgCgggGCUGCGGggGCuGgUCGGCCUc -3'
miRNA:   3'- aGCgGa--CGGCGUCaaUG-CgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 49843 0.77 0.318289
Target:  5'- gCGCCUGCUGC-----CGCUCGGCCUc -3'
miRNA:   3'- aGCGGACGGCGucaauGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 52506 0.68 0.78748
Target:  5'- cCGCCUGCCGCugcccaacuguAGcccgcCGCccuacCGGCCCc -3'
miRNA:   3'- aGCGGACGGCG-----------UCaau--GCGa----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 53175 0.69 0.724129
Target:  5'- cCGCCcucGCCGaugaagauggcCAGcgGCGCgCGGCCCg -3'
miRNA:   3'- aGCGGa--CGGC-----------GUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 53968 0.67 0.837005
Target:  5'- gUC-CUUGCCGUGGUcgugaucGCGCUCGacguuGCCCa -3'
miRNA:   3'- -AGcGGACGGCGUCAa------UGCGAGC-----CGGG- -5'
13965 3' -59.4 NC_003521.1 + 54565 0.66 0.859602
Target:  5'- gCGCUUGaCGCGGg--UGUgCGGCCCg -3'
miRNA:   3'- aGCGGACgGCGUCaauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 55606 0.69 0.733455
Target:  5'- cUCGUCguacaCGCAGUccCGCgCGGCCCa -3'
miRNA:   3'- -AGCGGacg--GCGUCAauGCGaGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.