miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 84 0.73 0.46856
Target:  5'- gUCGCUUGCCGCGGgcgUGCagggaggccgaaGCggCGGCCg -3'
miRNA:   3'- -AGCGGACGGCGUCa--AUG------------CGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 4351 0.74 0.433862
Target:  5'- cCGCC-GCCgGCGGUU-CGCUCaucgcGGCCCg -3'
miRNA:   3'- aGCGGaCGG-CGUCAAuGCGAG-----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 4603 0.69 0.713789
Target:  5'- cCGCCgGCgGCGGUgGCGCcaggcauggacggUCGaGCCCc -3'
miRNA:   3'- aGCGGaCGgCGUCAaUGCG-------------AGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 5707 0.72 0.560792
Target:  5'- gCGCCgucaCCGgGGUUAUGUguaCGGCCCg -3'
miRNA:   3'- aGCGGac--GGCgUCAAUGCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 6454 0.68 0.750038
Target:  5'- gUCaCUUGCCGCAGaucgucucguucUGCGCcUGGCCCc -3'
miRNA:   3'- -AGcGGACGGCGUCa-----------AUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 6657 0.73 0.513833
Target:  5'- gUCGCC-GCCGCGGUa--GCUgCGGCgCCc -3'
miRNA:   3'- -AGCGGaCGGCGUCAaugCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 6731 0.67 0.804568
Target:  5'- aCGCCaugcccuggucgUGCCGguGUUu--CUCGGCCg -3'
miRNA:   3'- aGCGG------------ACGGCguCAAugcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 17105 0.67 0.821094
Target:  5'- cCGCCUGCgC-CGGcgaggACGgUCGGUCCu -3'
miRNA:   3'- aGCGGACG-GcGUCaa---UGCgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 19093 0.69 0.705272
Target:  5'- cCGCCUcUCGCGGUUGCGgUC-GCUCa -3'
miRNA:   3'- aGCGGAcGGCGUCAAUGCgAGcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 19384 0.68 0.751863
Target:  5'- gUUGCCgaGCaCGCAGUggUACGUgcCGGCCg -3'
miRNA:   3'- -AGCGGa-CG-GCGUCA--AUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 24476 0.66 0.859602
Target:  5'- cCGCUggUGCUGCuGUUggacgACGUUCcGCCCa -3'
miRNA:   3'- aGCGG--ACGGCGuCAA-----UGCGAGcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 27281 0.67 0.812905
Target:  5'- gCGCCUggaGCCuCGGUUucgAUGCcgUGGCCCg -3'
miRNA:   3'- aGCGGA---CGGcGUCAA---UGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 27319 0.66 0.880543
Target:  5'- cUCGUC-GCUGguGaaACGCuacuuUCGGCCCc -3'
miRNA:   3'- -AGCGGaCGGCguCaaUGCG-----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 28523 0.66 0.880543
Target:  5'- aUCGCC-GCCGU-GUUcCuCUCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCGuCAAuGcGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 28759 0.71 0.579921
Target:  5'- cUCGCCacgUGCUGCAGgcuCGaCUCGGUCa -3'
miRNA:   3'- -AGCGG---ACGGCGUCaauGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 30939 0.77 0.316229
Target:  5'- gUCGCCgUGCCGUAGguagugccaagccagGCGCUCGGCa- -3'
miRNA:   3'- -AGCGG-ACGGCGUCaa-------------UGCGAGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 31068 0.66 0.859602
Target:  5'- uUCGCCggcggGCCcuCGG-UGCGCUacCGcGCCCa -3'
miRNA:   3'- -AGCGGa----CGGc-GUCaAUGCGA--GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 31163 0.98 0.013748
Target:  5'- cUCGCCUGCCGCAGUUcaGCUCGGCCCu -3'
miRNA:   3'- -AGCGGACGGCGUCAAugCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 32166 0.81 0.179843
Target:  5'- cUGCCUGCCGCAGUUccugUGCcgCGGCCUg -3'
miRNA:   3'- aGCGGACGGCGUCAAu---GCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 32888 0.66 0.852247
Target:  5'- gCGCC-GCCGguGcUGcCGC-CGuGCCCg -3'
miRNA:   3'- aGCGGaCGGCguCaAU-GCGaGC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.