miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 151508 0.65 0.885177
Target:  5'- gUCGCCgucccagGCCGCGGaagaagaugaagaagGCGCcgCGGUCa -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------------UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 65749 0.65 0.884521
Target:  5'- gUCGCCUGCCuggucaccucgucCAGggUGCGUUgGGUCUc -3'
miRNA:   3'- -AGCGGACGGc------------GUCa-AUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 73627 0.66 0.866065
Target:  5'- gCGCCUGCCagcccaaGCAGaaggccucCGCcgCGGCCg -3'
miRNA:   3'- aGCGGACGG-------CGUCaau-----GCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 100649 0.66 0.859602
Target:  5'- cCGuCCcGCCGC-GUUGCG-UCGGCUg -3'
miRNA:   3'- aGC-GGaCGGCGuCAAUGCgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 78018 0.66 0.866774
Target:  5'- cUUGCgCUGaCC-CAGaUACaGCUCGGCCa -3'
miRNA:   3'- -AGCG-GAC-GGcGUCaAUG-CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 146179 0.66 0.866774
Target:  5'- cCGCgaGuuGCuGgccgGCGgaCGGCCCu -3'
miRNA:   3'- aGCGgaCggCGuCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 129775 0.66 0.866774
Target:  5'- gCGCCUGucCCGCGcacgUGCGCgccgaGGCCg -3'
miRNA:   3'- aGCGGAC--GGCGUca--AUGCGag---CCGGg -5'
13965 3' -59.4 NC_003521.1 + 75552 0.66 0.866774
Target:  5'- gCGCCgGCgGCGGcUACGC-CaGcGCCCu -3'
miRNA:   3'- aGCGGaCGgCGUCaAUGCGaG-C-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 54565 0.66 0.859602
Target:  5'- gCGCUUGaCGCGGg--UGUgCGGCCCg -3'
miRNA:   3'- aGCGGACgGCGUCaauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 162298 0.66 0.852247
Target:  5'- aCGCCgggaGuCCGCGGaauccGCGUcgcguguccggUCGGCCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUCaa---UGCG-----------AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 46442 0.66 0.873755
Target:  5'- cCGgCgggGCUGCGGggGCuGgUCGGCCUc -3'
miRNA:   3'- aGCgGa--CGGCGUCaaUG-CgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 172320 0.66 0.866774
Target:  5'- aCGCCgcUGgCGCAG--GC-CUCGGCCg -3'
miRNA:   3'- aGCGG--ACgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145651 0.66 0.859602
Target:  5'- gCGCCgagCGCgAGgUGCcCUCGGCCCg -3'
miRNA:   3'- aGCGGacgGCG-UCaAUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 109977 0.66 0.873755
Target:  5'- gCGCCUGCaGUAGggcgGCcuGC-CGGUCCa -3'
miRNA:   3'- aGCGGACGgCGUCaa--UG--CGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 105174 0.66 0.859602
Target:  5'- aCGCC-GCCG-----ACGCUgGGCCCc -3'
miRNA:   3'- aGCGGaCGGCgucaaUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 100184 0.66 0.859602
Target:  5'- gCGCCaGgCGCAG--GCuCUCGGCCg -3'
miRNA:   3'- aGCGGaCgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 78786 0.66 0.852247
Target:  5'- gUCGaCCucgaUGUCGCAGgucgACGagCGGCCCu -3'
miRNA:   3'- -AGC-GG----ACGGCGUCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 43119 0.66 0.852247
Target:  5'- -aGCgCUGCgGCGa--GCGCUCGGCgCu -3'
miRNA:   3'- agCG-GACGgCGUcaaUGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 168255 0.66 0.857415
Target:  5'- aCGCgUUGCCGCAcGagGCGCUgaucuggaucugcaCGGCCg -3'
miRNA:   3'- aGCG-GACGGCGU-CaaUGCGA--------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 118039 0.66 0.859602
Target:  5'- cCGCCagggGuCCGCA-UUGCuCUCGGCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUcAAUGcGAGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.