miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 121784 0.71 0.618534
Target:  5'- -gGCCacgggcagGUgGCGGUacuUGCGCUCGGCCg -3'
miRNA:   3'- agCGGa-------CGgCGUCA---AUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 127028 0.73 0.504627
Target:  5'- aCGCC-GCCGCGGUgcccgucGCGCU-GGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 43838 0.72 0.521247
Target:  5'- cCGCCgGCCGCGGgcccgucacagGCGCccCGGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa---------UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 120004 0.72 0.523107
Target:  5'- gCGCCgcugGCUGUAGUUGaucaGgUCGGCCUu -3'
miRNA:   3'- aGCGGa---CGGCGUCAAUg---CgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117147 0.72 0.523107
Target:  5'- cCGCCacGCCGCAGc-GCGC-CGGCUCc -3'
miRNA:   3'- aGCGGa-CGGCGUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 5707 0.72 0.560792
Target:  5'- gCGCCgucaCCGgGGUUAUGUguaCGGCCCg -3'
miRNA:   3'- aGCGGac--GGCgUCAAUGCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223328 0.71 0.579921
Target:  5'- gUCGCgCUGCCGCAGaUAgGUgccccaGGCCUc -3'
miRNA:   3'- -AGCG-GACGGCGUCaAUgCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 217600 0.71 0.589538
Target:  5'- cCGCCccgGaCCaGCAGggGCGuCUCGGCCg -3'
miRNA:   3'- aGCGGa--C-GG-CGUCaaUGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 138058 0.71 0.599184
Target:  5'- gUCGCCcgcgaccGCCGCGGacagcugagGCGCU-GGCCCu -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 57816 0.73 0.504627
Target:  5'- aCGCCcagcUGCCGCAugaa-GCUCGGCCg -3'
miRNA:   3'- aGCGG----ACGGCGUcaaugCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 223647 0.73 0.495493
Target:  5'- gCGCCUGCC-CAGcugccagcgcUGCGcCUCGGCCUc -3'
miRNA:   3'- aGCGGACGGcGUCa---------AUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 240633 0.73 0.46856
Target:  5'- gUCGCUUGCCGCGGgcgUGCagggaggccgaaGCggCGGCCg -3'
miRNA:   3'- -AGCGGACGGCGUCa--AUG------------CGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 30939 0.77 0.316229
Target:  5'- gUCGCCgUGCCGUAGguagugccaagccagGCGCUCGGCa- -3'
miRNA:   3'- -AGCGG-ACGGCGUCaa-------------UGCGAGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 49843 0.77 0.318289
Target:  5'- gCGCCUGCUGC-----CGCUCGGCCUc -3'
miRNA:   3'- aGCGGACGGCGucaauGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 62224 0.75 0.400703
Target:  5'- aCGCCgUGCUGCAGgaggGCGCcCGGCUg -3'
miRNA:   3'- aGCGG-ACGGCGUCaa--UGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 137883 0.75 0.400703
Target:  5'- gCGCCUGgaCCGCG---ACGcCUCGGCCCu -3'
miRNA:   3'- aGCGGAC--GGCGUcaaUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226259 0.74 0.417081
Target:  5'- -aGCUUcacGUCGCAGUucaggaUGCGCUCGGCCg -3'
miRNA:   3'- agCGGA---CGGCGUCA------AUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 4351 0.74 0.433862
Target:  5'- cCGCC-GCCgGCGGUU-CGCUCaucgcGGCCCg -3'
miRNA:   3'- aGCGGaCGG-CGUCAAuGCGAG-----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74176 0.74 0.45975
Target:  5'- -gGCCgacugcGCCGCGGcgcccgGCGCgCGGCCCg -3'
miRNA:   3'- agCGGa-----CGGCGUCaa----UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 84 0.73 0.46856
Target:  5'- gUCGCUUGCCGCGGgcgUGCagggaggccgaaGCggCGGCCg -3'
miRNA:   3'- -AGCGGACGGCGUCa--AUG------------CGa-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.