miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 240633 0.73 0.46856
Target:  5'- gUCGCUUGCCGCGGgcgUGCagggaggccgaaGCggCGGCCg -3'
miRNA:   3'- -AGCGGACGGCGUCa--AUG------------CGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 239373 0.67 0.821094
Target:  5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3'
miRNA:   3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 238952 0.7 0.637921
Target:  5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 238713 0.67 0.837005
Target:  5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 234469 0.72 0.560792
Target:  5'- cCGUCUucggagGCCGCGcgcgaACGCUUGGCCCg -3'
miRNA:   3'- aGCGGA------CGGCGUcaa--UGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 234353 0.66 0.852247
Target:  5'- -gGCCUGaCGCAGccaGCGCUC-GCCg -3'
miRNA:   3'- agCGGACgGCGUCaa-UGCGAGcCGGg -5'
13965 3' -59.4 NC_003521.1 + 233178 0.66 0.873755
Target:  5'- cCGCCguggcgGCCGCcGUUACcgUCGGUCg -3'
miRNA:   3'- aGCGGa-----CGGCGuCAAUGcgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 226839 0.69 0.714732
Target:  5'- cUCGCCcGCCGCc---GCGCcgggcaGGCCCa -3'
miRNA:   3'- -AGCGGaCGGCGucaaUGCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226492 0.68 0.78748
Target:  5'- gUCGCgggUGUCGUAGgcguagaUGCGCgaauagCGGCCCu -3'
miRNA:   3'- -AGCGg--ACGGCGUCa------AUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226448 0.67 0.82913
Target:  5'- -aGCa-GCUGCAG-UGCGUcUGGCCCu -3'
miRNA:   3'- agCGgaCGGCGUCaAUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226335 0.68 0.778745
Target:  5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3'
miRNA:   3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 226259 0.74 0.417081
Target:  5'- -aGCUUcacGUCGCAGUucaggaUGCGCUCGGCCg -3'
miRNA:   3'- agCGGA---CGGCGUCA------AUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 226075 0.66 0.873755
Target:  5'- gCGCCccgGCCGCG-----GC-CGGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGUcaaugCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 225580 0.69 0.699568
Target:  5'- gUCGuCCUGgCGCucggcggccucGCGCUCGGCCg -3'
miRNA:   3'- -AGC-GGACgGCGucaa-------UGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 225081 0.67 0.821094
Target:  5'- cCGCCaGCCGCAGacgcccUACGCcacgCGcGUCCc -3'
miRNA:   3'- aGCGGaCGGCGUCa-----AUGCGa---GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 224822 0.67 0.821094
Target:  5'- cUGCgCUGCCGCuGGUUccUGCUgGGCgCCg -3'
miRNA:   3'- aGCG-GACGGCG-UCAAu-GCGAgCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 224581 0.68 0.778745
Target:  5'- -aGCacggGCUGCG---GCGCUCGGCUCg -3'
miRNA:   3'- agCGga--CGGCGUcaaUGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 224082 0.68 0.760929
Target:  5'- gCGCCcgcgGUgGCGGcgGCGCa-GGCCCg -3'
miRNA:   3'- aGCGGa---CGgCGUCaaUGCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223838 0.67 0.82913
Target:  5'- gCGCCUGCUgucccuGCGGcUGCuGCUgCGGCUg -3'
miRNA:   3'- aGCGGACGG------CGUCaAUG-CGA-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 223677 0.66 0.859602
Target:  5'- -aGCUUugacGCCGCGccGggGCGCcacaCGGCCCg -3'
miRNA:   3'- agCGGA----CGGCGU--CaaUGCGa---GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.