Results 21 - 40 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 103739 | 0.73 | 0.504627 |
Target: 5'- gCGCgUGCCGCAGUucgucgccUACGCcgUGGCgCg -3' miRNA: 3'- aGCGgACGGCGUCA--------AUGCGa-GCCGgG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 57816 | 0.73 | 0.504627 |
Target: 5'- aCGCCcagcUGCCGCAugaa-GCUCGGCCg -3' miRNA: 3'- aGCGG----ACGGCGUcaaugCGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 127028 | 0.73 | 0.504627 |
Target: 5'- aCGCC-GCCGCGGUgcccgucGCGCU-GGCCg -3' miRNA: 3'- aGCGGaCGGCGUCAa------UGCGAgCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 6657 | 0.73 | 0.513833 |
Target: 5'- gUCGCC-GCCGCGGUa--GCUgCGGCgCCc -3' miRNA: 3'- -AGCGGaCGGCGUCAaugCGA-GCCG-GG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 43838 | 0.72 | 0.521247 |
Target: 5'- cCGCCgGCCGCGGgcccgucacagGCGCccCGGCCg -3' miRNA: 3'- aGCGGaCGGCGUCaa---------UGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 120004 | 0.72 | 0.523107 |
Target: 5'- gCGCCgcugGCUGUAGUUGaucaGgUCGGCCUu -3' miRNA: 3'- aGCGGa---CGGCGUCAAUg---CgAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 117147 | 0.72 | 0.523107 |
Target: 5'- cCGCCacGCCGCAGc-GCGC-CGGCUCc -3' miRNA: 3'- aGCGGa-CGGCGUCaaUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 35910 | 0.72 | 0.532444 |
Target: 5'- cUCGCCUGCCGCucgcaGCGCgugCGGgaCCu -3' miRNA: 3'- -AGCGGACGGCGucaa-UGCGa--GCCg-GG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 219720 | 0.72 | 0.555086 |
Target: 5'- gUCGCUcgUGCCGCAGcUgaccgagcugugcgaGCGCUgggauaCGGCCCu -3' miRNA: 3'- -AGCGG--ACGGCGUCaA---------------UGCGA------GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 5707 | 0.72 | 0.560792 |
Target: 5'- gCGCCgucaCCGgGGUUAUGUguaCGGCCCg -3' miRNA: 3'- aGCGGac--GGCgUCAAUGCGa--GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 234469 | 0.72 | 0.560792 |
Target: 5'- cCGUCUucggagGCCGCGcgcgaACGCUUGGCCCg -3' miRNA: 3'- aGCGGA------CGGCGUcaa--UGCGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 146685 | 0.72 | 0.570337 |
Target: 5'- aUCGUa-GCCGCgcaGGUUgACGCggCGGCCCa -3' miRNA: 3'- -AGCGgaCGGCG---UCAA-UGCGa-GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 223328 | 0.71 | 0.579921 |
Target: 5'- gUCGCgCUGCCGCAGaUAgGUgccccaGGCCUc -3' miRNA: 3'- -AGCG-GACGGCGUCaAUgCGag----CCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 28759 | 0.71 | 0.579921 |
Target: 5'- cUCGCCacgUGCUGCAGgcuCGaCUCGGUCa -3' miRNA: 3'- -AGCGG---ACGGCGUCaauGC-GAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 217600 | 0.71 | 0.589538 |
Target: 5'- cCGCCccgGaCCaGCAGggGCGuCUCGGCCg -3' miRNA: 3'- aGCGGa--C-GG-CGUCaaUGC-GAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 154298 | 0.71 | 0.596287 |
Target: 5'- gCGCCUGCCGCGGcaAgagcaugcaccaggUGCUgCGGaCCCg -3' miRNA: 3'- aGCGGACGGCGUCaaU--------------GCGA-GCC-GGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 138058 | 0.71 | 0.599184 |
Target: 5'- gUCGCCcgcgaccGCCGCGGacagcugagGCGCU-GGCCCu -3' miRNA: 3'- -AGCGGa------CGGCGUCaa-------UGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 91920 | 0.71 | 0.599184 |
Target: 5'- gCGCCagggaGCCGCGGgcACGC-CGGCUUu -3' miRNA: 3'- aGCGGa----CGGCGUCaaUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 102610 | 0.71 | 0.608851 |
Target: 5'- gCGCCUGCCGCcaccccgGCG-UCGGCgCCc -3' miRNA: 3'- aGCGGACGGCGucaa---UGCgAGCCG-GG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 164016 | 0.71 | 0.608851 |
Target: 5'- cCGCCgugagcGCCGCuGUUGcCGC-CGGCgCCg -3' miRNA: 3'- aGCGGa-----CGGCGuCAAU-GCGaGCCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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