miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 56011 0.67 0.840108
Target:  5'- gCGCCUGUCGCugccgcccgcgcgcuGGgagGCGCUgCGcGCCg -3'
miRNA:   3'- aGCGGACGGCG---------------UCaa-UGCGA-GC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 57816 0.73 0.504627
Target:  5'- aCGCCcagcUGCCGCAugaa-GCUCGGCCg -3'
miRNA:   3'- aGCGG----ACGGCGUcaaugCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 59905 0.67 0.812905
Target:  5'- gCGUCUGCCGCAccaACGCcugCGaGCCg -3'
miRNA:   3'- aGCGGACGGCGUcaaUGCGa--GC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 61684 0.69 0.742702
Target:  5'- cUCGCUcaggUGCCGCAugcuguCGCugagcaguuugUCGGCCCg -3'
miRNA:   3'- -AGCGG----ACGGCGUcaau--GCG-----------AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 62224 0.75 0.400703
Target:  5'- aCGCCgUGCUGCAGgaggGCGCcCGGCUg -3'
miRNA:   3'- aGCGG-ACGGCGUCaa--UGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 64219 0.66 0.852247
Target:  5'- gCGCCgcGCCaGCAGcuccACGCUCaGCCg -3'
miRNA:   3'- aGCGGa-CGG-CGUCaa--UGCGAGcCGGg -5'
13965 3' -59.4 NC_003521.1 + 64602 0.67 0.804568
Target:  5'- gCGgCUGgCGCGGgacgacACGCuUCGGCCg -3'
miRNA:   3'- aGCgGACgGCGUCaa----UGCG-AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 65025 0.7 0.676589
Target:  5'- aUCGCCcggUGCCGCGccGgccgGCGuCUUGGCCa -3'
miRNA:   3'- -AGCGG---ACGGCGU--Caa--UGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 65749 0.65 0.884521
Target:  5'- gUCGCCUGCCuggucaccucgucCAGggUGCGUUgGGUCUc -3'
miRNA:   3'- -AGCGGACGGc------------GUCa-AUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 66347 0.66 0.873755
Target:  5'- -gGCCcaaCGCAGggcuCGCUCGGCUg -3'
miRNA:   3'- agCGGacgGCGUCaau-GCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 67856 0.69 0.705272
Target:  5'- -aGCUUGcCCGCGuGUUgGCGaCUCuGGCCCg -3'
miRNA:   3'- agCGGAC-GGCGU-CAA-UGC-GAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 69178 0.68 0.755501
Target:  5'- aCGCCcGCCGCGGccGCGCuagacauacccgacgUCGGCg- -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCG---------------AGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 70402 0.68 0.78748
Target:  5'- gCGCUcGCCGCAGcucgAgGCccugauagCGGCCCu -3'
miRNA:   3'- aGCGGaCGGCGUCaa--UgCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70593 0.68 0.796091
Target:  5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3'
miRNA:   3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 70743 0.68 0.769892
Target:  5'- uUCGuCCaGCUGCAGc-GCGCcgCGGCCg -3'
miRNA:   3'- -AGC-GGaCGGCGUCaaUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 71503 0.68 0.769892
Target:  5'- aCGCCgGCCGCG---ACGCUgcgaccgacgcCGGCCg -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGA-----------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 73546 0.7 0.657291
Target:  5'- gCGuCCUGCCGCAGgcagAUGCUgaugaUGGCgCa -3'
miRNA:   3'- aGC-GGACGGCGUCaa--UGCGA-----GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 73627 0.66 0.866065
Target:  5'- gCGCCUGCCagcccaaGCAGaaggccucCGCcgCGGCCg -3'
miRNA:   3'- aGCGGACGG-------CGUCaau-----GCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 74176 0.74 0.45975
Target:  5'- -gGCCgacugcGCCGCGGcgcccgGCGCgCGGCCCg -3'
miRNA:   3'- agCGGa-----CGGCGUCaa----UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74442 0.68 0.751863
Target:  5'- gCGCCgggcGCCGCG---GCGCagCGGCCa -3'
miRNA:   3'- aGCGGa---CGGCGUcaaUGCGa-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.