miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 168209 0.66 0.997663
Target:  5'- aCGGugauguugugcAGCuUGAGCAGCGcgcucuugaGCGCCuggaacgcguuGCCGCa -3'
miRNA:   3'- -GCC-----------UUG-ACUCGUUGU---------UGCGGu----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35136 0.66 0.997663
Target:  5'- cCGcGACUGAGCGcgGguGCGCCA--CGCg -3'
miRNA:   3'- -GCcUUGACUCGU--UguUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 129514 0.66 0.995588
Target:  5'- aGGGAg-GAGCucgAGCGCCGACCa- -3'
miRNA:   3'- gCCUUgaCUCGuugUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 201763 0.66 0.997663
Target:  5'- aGGAGCUggaaaacuacGAGCcguucgccuCGGCGCCAcacCCGCc -3'
miRNA:   3'- gCCUUGA----------CUCGuu-------GUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 181214 0.66 0.997242
Target:  5'- aGGAACU--GCG--AugGCCGAUCGCc -3'
miRNA:   3'- gCCUUGAcuCGUugUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 100867 0.66 0.996761
Target:  5'- cCGGGACUGcuccauGCuGCuGCGUCGACUGa -3'
miRNA:   3'- -GCCUUGACu-----CGuUGuUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 44956 0.66 0.997815
Target:  5'- aGGAA--GGGCGGCGACaCCGcgauccccgaacccuGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUGcGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116633 0.66 0.996761
Target:  5'- uGGAGuucCUcAGCGGCAgcuACGCCGGCCu- -3'
miRNA:   3'- gCCUU---GAcUCGUUGU---UGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 55181 0.66 0.997663
Target:  5'- gCGGAcGCUGAaacacgaccgGCGAUGGCaGUCcGCCGCg -3'
miRNA:   3'- -GCCU-UGACU----------CGUUGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60114 0.66 0.996961
Target:  5'- cCGGGgcuggugacgcgacuGCUGAGCGaggaggugucgaGCAcgcaggccucGCGCCAacgccuggaGCCGCu -3'
miRNA:   3'- -GCCU---------------UGACUCGU------------UGU----------UGCGGU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 18764 0.66 0.998029
Target:  5'- aCGGGucGCUGcuGCGACGGCugguGCCccCCGCc -3'
miRNA:   3'- -GCCU--UGACu-CGUUGUUG----CGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 67123 0.66 0.997242
Target:  5'- --cAGCaGcAGCAACAGCaGCgGGCCGCa -3'
miRNA:   3'- gccUUGaC-UCGUUGUUG-CGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 118200 0.66 0.998029
Target:  5'- uCGGGGCcgccGAGCGcGCGGcCGCC-GCCGUc -3'
miRNA:   3'- -GCCUUGa---CUCGU-UGUU-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 80470 0.66 0.997994
Target:  5'- aGGAA---GGCGGCGACGCCcucgacgacggagGccACCGCg -3'
miRNA:   3'- gCCUUgacUCGUUGUUGCGG-------------U--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 143914 0.66 0.997242
Target:  5'- aGGAGacGGGC-ACGGCGC--GCCGCa -3'
miRNA:   3'- gCCUUgaCUCGuUGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37042 0.66 0.996761
Target:  5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3'
miRNA:   3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 68537 0.66 0.996761
Target:  5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3'
miRNA:   3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 232711 0.66 0.997663
Target:  5'- uGGAGaucuacgaUGGGCAGaCGACuCCgAGCCGCu -3'
miRNA:   3'- gCCUUg-------ACUCGUU-GUUGcGG-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 1476 0.66 0.997242
Target:  5'- aCGGAcuaUGGGgAACGcCGCUAcACCGCc -3'
miRNA:   3'- -GCCUug-ACUCgUUGUuGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59606 0.66 0.997242
Target:  5'- aCGGuAgUGgcGGCGGCcccGGCGgCGACCGCg -3'
miRNA:   3'- -GCCuUgAC--UCGUUG---UUGCgGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.