Results 21 - 40 of 622 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 5' | -51.8 | NC_003521.1 | + | 78134 | 0.66 | 0.996761 |
Target: 5'- uGG---UGGGCGcguuaGCGGCGgCGGCCGCg -3' miRNA: 3'- gCCuugACUCGU-----UGUUGCgGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 25783 | 0.66 | 0.996761 |
Target: 5'- aGGGGCUccacgcGGCuGCAGCccaccaucagcuGCCAGCCGUa -3' miRNA: 3'- gCCUUGAc-----UCGuUGUUG------------CGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 37042 | 0.66 | 0.996761 |
Target: 5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3' miRNA: 3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 55559 | 0.66 | 0.997623 |
Target: 5'- gGGAAguagcacucgcggUUGAGCGgacACAGCGaCCAcACCGUc -3' miRNA: 3'- gCCUU-------------GACUCGU---UGUUGC-GGU-UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 163092 | 0.66 | 0.995588 |
Target: 5'- cCGGcccgucCUcGGGCGcCAGCGCCAcgaccACCGCc -3' miRNA: 3'- -GCCuu----GA-CUCGUuGUUGCGGU-----UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 25541 | 0.66 | 0.995588 |
Target: 5'- aGGGA--GAGCGACGgcggACGCUguugugcaggcGGCCGCg -3' miRNA: 3'- gCCUUgaCUCGUUGU----UGCGG-----------UUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 106605 | 0.66 | 0.997623 |
Target: 5'- aGGAcCgUGAGCAucgugggACGAUGCCAAagGCg -3' miRNA: 3'- gCCUuG-ACUCGU-------UGUUGCGGUUggCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 68537 | 0.66 | 0.996761 |
Target: 5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3' miRNA: 3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 1476 | 0.66 | 0.997242 |
Target: 5'- aCGGAcuaUGGGgAACGcCGCUAcACCGCc -3' miRNA: 3'- -GCCUug-ACUCgUUGUuGCGGU-UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 99594 | 0.66 | 0.997242 |
Target: 5'- -aGAACUGcGGCGcguuggugaccuGCAGCGCCcGGCgGCg -3' miRNA: 3'- gcCUUGAC-UCGU------------UGUUGCGG-UUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 73831 | 0.66 | 0.996761 |
Target: 5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3' miRNA: 3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 59606 | 0.66 | 0.997242 |
Target: 5'- aCGGuAgUGgcGGCGGCcccGGCGgCGACCGCg -3' miRNA: 3'- -GCCuUgAC--UCGUUG---UUGCgGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 213720 | 0.66 | 0.997242 |
Target: 5'- gGGGAUgcccAGCcaGACGGCGCCGcagaagGCCGUg -3' miRNA: 3'- gCCUUGac--UCG--UUGUUGCGGU------UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 116633 | 0.66 | 0.996761 |
Target: 5'- uGGAGuucCUcAGCGGCAgcuACGCCGGCCu- -3' miRNA: 3'- gCCUU---GAcUCGUUGU---UGCGGUUGGcg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 122101 | 0.66 | 0.997242 |
Target: 5'- uGGucucguGCggcuGCAGCGGCGUCucGCCGCg -3' miRNA: 3'- gCCu-----UGacu-CGUUGUUGCGGu-UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 184101 | 0.66 | 0.995521 |
Target: 5'- uCGGAccGCUgaugaacGAGUAAUAAUGCgCGGCCGa -3' miRNA: 3'- -GCCU--UGA-------CUCGUUGUUGCG-GUUGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 31956 | 0.66 | 0.996211 |
Target: 5'- aGGAACaG-GCAcAUggUGCCGuccaGCCGCa -3' miRNA: 3'- gCCUUGaCuCGU-UGuuGCGGU----UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 168539 | 0.66 | 0.997242 |
Target: 5'- gCGGccAGCgcGGCGGCGGCGCUggcgGGCUGCg -3' miRNA: 3'- -GCC--UUGacUCGUUGUUGCGG----UUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 87678 | 0.66 | 0.996761 |
Target: 5'- uGGuuGCUGAGCGugGagGCGCCcgagaggcCCGUg -3' miRNA: 3'- gCCu-UGACUCGUugU--UGCGGuu------GGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 63141 | 0.66 | 0.997242 |
Target: 5'- uGGAGC--AGCAGCuGCGCgGGCUGa -3' miRNA: 3'- gCCUUGacUCGUUGuUGCGgUUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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