miRNA display CGI


Results 21 - 40 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 59606 0.66 0.997242
Target:  5'- aCGGuAgUGgcGGCGGCcccGGCGgCGACCGCg -3'
miRNA:   3'- -GCCuUgAC--UCGUUG---UUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 106605 0.66 0.997623
Target:  5'- aGGAcCgUGAGCAucgugggACGAUGCCAAagGCg -3'
miRNA:   3'- gCCUuG-ACUCGU-------UGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 100867 0.66 0.996761
Target:  5'- cCGGGACUGcuccauGCuGCuGCGUCGACUGa -3'
miRNA:   3'- -GCCUUGACu-----CGuUGuUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 192165 0.66 0.997242
Target:  5'- aGGu-CUGcGGUGuCAGCGCCggUCGCg -3'
miRNA:   3'- gCCuuGAC-UCGUuGUUGCGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 25541 0.66 0.995588
Target:  5'- aGGGA--GAGCGACGgcggACGCUguugugcaggcGGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGU----UGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55559 0.66 0.997623
Target:  5'- gGGAAguagcacucgcggUUGAGCGgacACAGCGaCCAcACCGUc -3'
miRNA:   3'- gCCUU-------------GACUCGU---UGUUGC-GGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63605 0.66 0.996761
Target:  5'- aGGAcccaGCUGucCGaccuGCAGCGCCGccuggagaaguACCGCa -3'
miRNA:   3'- gCCU----UGACucGU----UGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 67123 0.66 0.997242
Target:  5'- --cAGCaGcAGCAACAGCaGCgGGCCGCa -3'
miRNA:   3'- gccUUGaC-UCGUUGUUG-CGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 129514 0.66 0.995588
Target:  5'- aGGGAg-GAGCucgAGCGCCGACCa- -3'
miRNA:   3'- gCCUUgaCUCGuugUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 45307 0.66 0.997242
Target:  5'- aGGAGCcgGAGCccgAGCug-GCCGACgGCu -3'
miRNA:   3'- gCCUUGa-CUCG---UUGuugCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 200285 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 63141 0.66 0.997242
Target:  5'- uGGAGC--AGCAGCuGCGCgGGCUGa -3'
miRNA:   3'- gCCUUGacUCGUUGuUGCGgUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 87678 0.66 0.996761
Target:  5'- uGGuuGCUGAGCGugGagGCGCCcgagaggcCCGUg -3'
miRNA:   3'- gCCu-UGACUCGUugU--UGCGGuu------GGCG- -5'
13965 5' -51.8 NC_003521.1 + 213720 0.66 0.997242
Target:  5'- gGGGAUgcccAGCcaGACGGCGCCGcagaagGCCGUg -3'
miRNA:   3'- gCCUUGac--UCG--UUGUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73831 0.66 0.996761
Target:  5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3'
miRNA:   3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 184101 0.66 0.995521
Target:  5'- uCGGAccGCUgaugaacGAGUAAUAAUGCgCGGCCGa -3'
miRNA:   3'- -GCCU--UGA-------CUCGUUGUUGCG-GUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 30574 0.66 0.996761
Target:  5'- uCGGggUaGGGCAGgucCAAgUGCCGuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGUU---GUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 151257 0.66 0.995588
Target:  5'- uGGGAC--GGCGACGACGagGAgCGCg -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCggUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 168539 0.66 0.997242
Target:  5'- gCGGccAGCgcGGCGGCGGCGCUggcgGGCUGCg -3'
miRNA:   3'- -GCC--UUGacUCGUUGUUGCGG----UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.