miRNA display CGI


Results 21 - 40 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 129686 0.78 0.652965
Target:  5'- aGGAGCUGucgacgGGCGAgGACGCCcgcuucugccGGCCGCg -3'
miRNA:   3'- gCCUUGAC------UCGUUgUUGCGG----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63926 0.78 0.663127
Target:  5'- uGGAGCUGcAGCAG-GACGUCAACCGg -3'
miRNA:   3'- gCCUUGAC-UCGUUgUUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 87903 0.78 0.663127
Target:  5'- uGGAcUUGAGCAACGACuccugGCUGGCCGCc -3'
miRNA:   3'- gCCUuGACUCGUUGUUG-----CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222223 0.77 0.713395
Target:  5'- uGGAgcugucgugucaGCUGAGCAGCGACGaggaCGaggcGCCGCg -3'
miRNA:   3'- gCCU------------UGACUCGUUGUUGCg---GU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 89819 0.77 0.713395
Target:  5'- uCGGGugUGcGCuACGgcgcuuACGCCGACCGCg -3'
miRNA:   3'- -GCCUugACuCGuUGU------UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 165642 0.77 0.723279
Target:  5'- aCGGugUUGAGCAGCAgcACGCCGcGCgGCa -3'
miRNA:   3'- -GCCuuGACUCGUUGU--UGCGGU-UGgCG- -5'
13965 5' -51.8 NC_003521.1 + 29229 0.77 0.723279
Target:  5'- uGGAgauccucuACUGGGCcuccagccgcGGCGACGaCCAGCCGCu -3'
miRNA:   3'- gCCU--------UGACUCG----------UUGUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 114824 0.76 0.732108
Target:  5'- uGGAGCUGGGCAcgcGCAccgugcucaugcuGCGCCuuagcgugcuGCCGCu -3'
miRNA:   3'- gCCUUGACUCGU---UGU-------------UGCGGu---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204211 0.76 0.742804
Target:  5'- cCGGAuUUGAGCGAgGGCGUCAggcaGCCGUg -3'
miRNA:   3'- -GCCUuGACUCGUUgUUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 5815 0.76 0.761946
Target:  5'- aCGGAACaacgaUGgcGGCGGCcGCGCCGGCUGCc -3'
miRNA:   3'- -GCCUUG-----AC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 146666 0.76 0.761946
Target:  5'- aGGAGgacGGCAACGAaGCCGACCGCa -3'
miRNA:   3'- gCCUUgacUCGUUGUUgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196417 0.76 0.761946
Target:  5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3'
miRNA:   3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 202084 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239231 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 84168 0.75 0.780631
Target:  5'- cCGGAGC-GGGgGACuucGCGCCAcCCGCa -3'
miRNA:   3'- -GCCUUGaCUCgUUGu--UGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 91972 0.75 0.780631
Target:  5'- uCGGAAg-GAGCGGC-ACGCaGACCGCa -3'
miRNA:   3'- -GCCUUgaCUCGUUGuUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226810 0.75 0.78705
Target:  5'- aGGAcCUGAcGguACAGCGCCAugggguccucgcccGCCGCc -3'
miRNA:   3'- gCCUuGACU-CguUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 113583 0.75 0.787961
Target:  5'- uGGGGCUGGGCcucgggggcaacgggGGCGGCGCucugcucaugcagcuCAGCCGCg -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCG---------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164750 0.75 0.788871
Target:  5'- gCGGAggcgacggugacgGCUGcggcGGCGGCAGCGgCGACCGUg -3'
miRNA:   3'- -GCCU-------------UGAC----UCGUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 100238 0.75 0.78978
Target:  5'- uGGAGCUGGGCGaggugcccgACGAcgagcugucgcCGCCGccGCCGCa -3'
miRNA:   3'- gCCUUGACUCGU---------UGUU-----------GCGGU--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.