miRNA display CGI


Results 21 - 40 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 154650 0.66 0.998029
Target:  5'- --uGAUUG-GCGGCAGCGgCGACCGa -3'
miRNA:   3'- gccUUGACuCGUUGUUGCgGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 6648 0.66 0.997994
Target:  5'- gCGGuAGCUGcGGCGccccuccGCGACcCCGACCGg -3'
miRNA:   3'- -GCC-UUGAC-UCGU-------UGUUGcGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 121308 0.66 0.997994
Target:  5'- uGGGACcGgcgcagcGGCGACGAgGUCGgcGCCGCc -3'
miRNA:   3'- gCCUUGaC-------UCGUUGUUgCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 80470 0.66 0.997994
Target:  5'- aGGAA---GGCGGCGACGCCcucgacgacggagGccACCGCg -3'
miRNA:   3'- gCCUUgacUCGUUGUUGCGG-------------U--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 96787 0.66 0.997994
Target:  5'- cCGGcAGC--AGCGGCGGCGCUcgggcacGAUCGCg -3'
miRNA:   3'- -GCC-UUGacUCGUUGUUGCGG-------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 57798 0.66 0.997815
Target:  5'- uCGGGGCcucgcucuGCAAaaucucgcccgugauCAGCGCCGugCGCg -3'
miRNA:   3'- -GCCUUGacu-----CGUU---------------GUUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 135330 0.66 0.997815
Target:  5'- cCGGggUcGGGCGgguugccucccucccGCGcGCGCCGucuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGU---------------UGU-UGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 44956 0.66 0.997815
Target:  5'- aGGAA--GGGCGGCGACaCCGcgauccccgaacccuGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUGcGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 79077 0.66 0.997815
Target:  5'- uCGGGcaccagcucccccacGCUG-GCGAUGAccuCGCgCAACCGCu -3'
miRNA:   3'- -GCCU---------------UGACuCGUUGUU---GCG-GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 132266 0.66 0.997663
Target:  5'- aCGGGAuCUG-GUAcgaauugcGCAGCuCCAGCUGCg -3'
miRNA:   3'- -GCCUU-GACuCGU--------UGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 32239 0.66 0.997663
Target:  5'- aGGAGCUGuacauGCGGCugGACGgcaCCAugUGCc -3'
miRNA:   3'- gCCUUGACu----CGUUG--UUGC---GGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 42930 0.66 0.997663
Target:  5'- aGGuGAC-GAGCAACAucCGCU-GCCGCc -3'
miRNA:   3'- gCC-UUGaCUCGUUGUu-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239552 0.66 0.997663
Target:  5'- aGGAGCUggaaaacuacGAGCcguucgccuCGGCGCCAcacCCGCc -3'
miRNA:   3'- gCCUUGA----------CUCGuu-------GUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 35136 0.66 0.997663
Target:  5'- cCGcGACUGAGCGcgGguGCGCCA--CGCg -3'
miRNA:   3'- -GCcUUGACUCGU--UguUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 204503 0.66 0.997663
Target:  5'- gCGcGAACUGgccuGGCGGCggGugGCCGACgacuCGCa -3'
miRNA:   3'- -GC-CUUGAC----UCGUUG--UugCGGUUG----GCG- -5'
13965 5' -51.8 NC_003521.1 + 168209 0.66 0.997663
Target:  5'- aCGGugauguugugcAGCuUGAGCAGCGcgcucuugaGCGCCuggaacgcguuGCCGCa -3'
miRNA:   3'- -GCC-----------UUG-ACUCGUUGU---------UGCGGu----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 153098 0.66 0.997663
Target:  5'- uCGGugaauCUGGGgGcgcGCGACGCCgAGCUGUa -3'
miRNA:   3'- -GCCuu---GACUCgU---UGUUGCGG-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 210124 0.66 0.997663
Target:  5'- aCGGGACUcGGCGcuACGAgGUagagcuGCCGCa -3'
miRNA:   3'- -GCCUUGAcUCGU--UGUUgCGgu----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55181 0.66 0.997663
Target:  5'- gCGGAcGCUGAaacacgaccgGCGAUGGCaGUCcGCCGCg -3'
miRNA:   3'- -GCCU-UGACU----------CGUUGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 51926 0.66 0.997663
Target:  5'- aCGGAuuuCUGAcGCAGCAACcCCcaccCCGUc -3'
miRNA:   3'- -GCCUu--GACU-CGUUGUUGcGGuu--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.