Results 1 - 20 of 622 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 5' | -51.8 | NC_003521.1 | + | 214143 | 0.66 | 0.998029 |
Target: 5'- uGGAGuaGAGCAGCAGgGa--GCCGCg -3' miRNA: 3'- gCCUUgaCUCGUUGUUgCgguUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 201280 | 0.66 | 0.998029 |
Target: 5'- gCGGGGCgccGGGCggUccucCGCCGAUgGCg -3' miRNA: 3'- -GCCUUGa--CUCGuuGuu--GCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 131133 | 0.66 | 0.998029 |
Target: 5'- aGGGACaGcGCGACcccucgGCCGAUCGCa -3' miRNA: 3'- gCCUUGaCuCGUUGuug---CGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 112128 | 0.66 | 0.998029 |
Target: 5'- aGGGGCUG-GCGGCGugGC--GCUGg -3' miRNA: 3'- gCCUUGACuCGUUGUugCGguUGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 65515 | 0.66 | 0.998029 |
Target: 5'- uCGaGcGCUGucAGCuggGCGACGCCGagACCGUg -3' miRNA: 3'- -GC-CuUGAC--UCGu--UGUUGCGGU--UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 61417 | 0.66 | 0.998029 |
Target: 5'- aGGGACUGcAGCAugAGCuGC--ACCaGCa -3' miRNA: 3'- gCCUUGAC-UCGUugUUG-CGguUGG-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 75090 | 0.66 | 0.998029 |
Target: 5'- gCGGGACgccgucGCGcuCGGCGCCGuccguCCGCg -3' miRNA: 3'- -GCCUUGacu---CGUu-GUUGCGGUu----GGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 233453 | 0.66 | 0.998029 |
Target: 5'- gGGAACgaccGA-CggUAACGgCGGCCGCc -3' miRNA: 3'- gCCUUGa---CUcGuuGUUGCgGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 204117 | 0.66 | 0.998029 |
Target: 5'- gCGGAGC-GGGUgcucGGCGGCGaCAuCCGCg -3' miRNA: 3'- -GCCUUGaCUCG----UUGUUGCgGUuGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 239042 | 0.66 | 0.998029 |
Target: 5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3' miRNA: 3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 116759 | 0.66 | 0.998029 |
Target: 5'- aCGuGGCUuGuGCAGCGugGgCCGccGCCGCg -3' miRNA: 3'- -GCcUUGA-CuCGUUGUugC-GGU--UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 18764 | 0.66 | 0.998029 |
Target: 5'- aCGGGucGCUGcuGCGACGGCugguGCCccCCGCc -3' miRNA: 3'- -GCCU--UGACu-CGUUGUUG----CGGuuGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 240035 | 0.66 | 0.998029 |
Target: 5'- gCGGGGCgccGGGCggUccucCGCCGAUgGCg -3' miRNA: 3'- -GCCUUGa--CUCGuuGuu--GCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 112693 | 0.66 | 0.998029 |
Target: 5'- aGGAGCUccugcuggGGGUGGuCAACGCCcuagagagcguGACCGUc -3' miRNA: 3'- gCCUUGA--------CUCGUU-GUUGCGG-----------UUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 202273 | 0.66 | 0.998029 |
Target: 5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3' miRNA: 3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 118200 | 0.66 | 0.998029 |
Target: 5'- uCGGGGCcgccGAGCGcGCGGcCGCC-GCCGUc -3' miRNA: 3'- -GCCUUGa---CUCGU-UGUU-GCGGuUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 45095 | 0.66 | 0.998029 |
Target: 5'- ----cCUGGGCAGagguaGACGCCGGCCu- -3' miRNA: 3'- gccuuGACUCGUUg----UUGCGGUUGGcg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 154650 | 0.66 | 0.998029 |
Target: 5'- --uGAUUG-GCGGCAGCGgCGACCGa -3' miRNA: 3'- gccUUGACuCGUUGUUGCgGUUGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 140989 | 0.66 | 0.998029 |
Target: 5'- -aGAGCUGgcccucuccAGCAACAAgGCCcagcacguggaGGCCGUa -3' miRNA: 3'- gcCUUGAC---------UCGUUGUUgCGG-----------UUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 17340 | 0.66 | 0.998029 |
Target: 5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3' miRNA: 3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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